Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi968g00005 ATGTATTTTCTCAAGAGGAAGATTACCGGTAGGAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTCCCAGATAAATCTTTGCTCAAAAGTGGGGATTTGAAATGGTACTTCTTTAGCCCTGTAGGAAAGAAATATTGCACGGGAGGGAGGATGAATCGAGCGACTGAAATTGGGTACTGGAAGACTACAGGGAAGGATAGAGCAGTTGAACATGGGAATCAAGTGGTGGGGATGATTAGAACTCTGGTTTTTCACATTGGCAAAGCTCCTAAGGGAGACCGAACTGATTGGGTAATGCATGAATTCAGACTTGAGGACAAAGACTTAGCTGACAAAGGCATTGCACAGAATTCCTACGTGATTTGTAGGGTATTTCAAAAGGAGGGTCCTGGTCCAAGGAATGGTGCTCAGTATGGTAAACCATTTAATGAGAAAGACTGGGATAGTGAAGAGGAAATTGATTGTTTGCAATCTGTCCCTGCTGCTGCTATGTCTTTACCAGCTACAACTCTACCTAGCTCAAGCCATATTTCCGAAGAAAATGACATGCATCCCTCAACAAGTGGATGCATTGGACGGAACTCTTTATCATGTCTATCTAGATCAGTGCCCTCTGGCTTGCCACACCCTTCAGCTCCAAGCAATCAAATTGACGACGACATTTTATCCATGCTTGCTATTTTCAAAGATGATGAGGATACATTGGCAGGGAATGAAAACAACGGATCTGAGAAGGTTGATAATCCTGGTCAGGCAAACAATGCGGAAGGCGAACCTTATTTAGACCCAAATGAGATTTTCGGGGACTTGGGAGATCTTGAAAGCTTGGTTGGATGGGATGATGGAGATGGCTTTTCCCATGACCAAAAAGATGGGTATACTAAAAATGAAATGCCTTCTACTGGTGGCGATGTCTCTTTGTTTTGTGACCCCCATAATAATTACTTGGAGTTGATTGACCTAGATGCGCCATTGTTGTAG 1008 0.4306 MYFLKRKITGRKFPFDVIAELDIYKYAPWDLPDKSLLKSGDLKWYFFSPVGKKYCTGGRMNRATEIGYWKTTGKDRAVEHGNQVVGMIRTLVFHIGKAPKGDRTDWVMHEFRLEDKDLADKGIAQNSYVICRVFQKEGPGPRNGAQYGKPFNEKDWDSEEEIDCLQSVPAAAMSLPATTLPSSSHISEENDMHPSTSGCIGRNSLSCLSRSVPSGLPHPSAPSNQIDDDILSMLAIFKDDEDTLAGNENNGSEKVDNPGQANNAEGEPYLDPNEIFGDLGDLESLVGWDDGDGFSHDQKDGYTKNEMPSTGGDVSLFCDPHNNYLELIDLDAPLL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi968g00005 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 209 - -
Vivi968g00005 335 MobiDBLite consensus disorder prediction 243 267 - -
Vivi968g00005 335 Pfam No apical meristem (NAM) protein 2 113 IPR003441 GO:0003677|GO:0006355
Vivi968g00005 335 SUPERFAMILY NAC domain 1 136 IPR036093 GO:0003677|GO:0006355
Vivi968g00005 335 Gene3D NAC domain 1 138 IPR036093 GO:0003677|GO:0006355
Vivi968g00005 335 ProSiteProfiles NAC domain profile. 1 136 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi968g00005 2 249 NAC Transcription Factor Family AT5G09330 50.000 5.18e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi968g00005 NAM 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi968g00005 - - adu:107470479 429.098