Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi968g00004 ATGGCCGAAACAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGATGTTGAGCTCGTTATGTATTTTCTCAAGAGGAAGATTACCGGTAGGAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTCCCAGATAAATCTTTGCTCAAAAGTGGGGATTTGAAATGGTACTTCTTTAGCCCTGTAGGAAAGAAATATTGCACGGGAGGGAGGATGAATCGAGCGACTGAAATTGGGTACTGGAAGACTACAGGGAAGGATAGAGCAGTTGAACATGGGAATCAAGTGGTGGGGATGATTAGAACTCTGGTTTTTCACATTGGCAAAGCTCCTAAGGGAGACCGAACTGATTGGGTAATGCATGAATTCAGACTTGAGGACAAAGACTTAGCTGACAAAGGCATTGCACAGAATTCCTACGTGATTTGTAGGGTATTTCAAAAGGAGGGTCCTGGTCCAAGGAATGGTGCTCAGTATGGTAAACCATTTAATGAGAAAGACTGGGATAGTGAAGAGGAAATTGATTGTTTGCAATCTGTCCCTGCTGCTGCTATGTCTTTACCAGCTACAACTCTACCTAGCTCAAGCCATATTTCCGAAGAAAATGACATGCATCCCTCAACAAGTGGATGCATTGGACGGAACTCTTTATCATGTCTATCTAGATCAGTGCCCTCTGGCTTGCCACACCCTTCAGCTCCAAGCAATCAAATTGACGACGACATTTTATCCATGCTTGCTATTTTCAAAGATGATGAGGATACATTGGCAGGGAATGAAAACAACGGATCTGAGAAGGTTGATAATCCTGGTCAGGCAAACAATGCGGAAGGCGAACCTTATTTAGACCCAAATGAGATTTTCGGGGACTTGGGAGATCTTGAAAGCTTGGTTGGATGGGATGATGGAGATGGCTTTTCCCATGACCAAAAAGATGGGTATACTAAAAATGAAATGCCTTCTACTGGTGGCGATGTCTCTTTGTTTTGTGACCCCCATAATAATTACTTGGAGTTGATTGACCTAGATGCGCCATTGTTGTAG 1068 0.4316 MAETKLIPGFRFHPTDVELVMYFLKRKITGRKFPFDVIAELDIYKYAPWDLPDKSLLKSGDLKWYFFSPVGKKYCTGGRMNRATEIGYWKTTGKDRAVEHGNQVVGMIRTLVFHIGKAPKGDRTDWVMHEFRLEDKDLADKGIAQNSYVICRVFQKEGPGPRNGAQYGKPFNEKDWDSEEEIDCLQSVPAAAMSLPATTLPSSSHISEENDMHPSTSGCIGRNSLSCLSRSVPSGLPHPSAPSNQIDDDILSMLAIFKDDEDTLAGNENNGSEKVDNPGQANNAEGEPYLDPNEIFGDLGDLESLVGWDDGDGFSHDQKDGYTKNEMPSTGGDVSLFCDPHNNYLELIDLDAPLL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi968g00004 355 MobiDBLite consensus disorder prediction 263 287 - -
Vivi968g00004 355 FunFam Nac domain-containing protein 86 15 159 - -
Vivi968g00004 355 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Vivi968g00004 355 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Vivi968g00004 355 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vivi968g00004 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 226 - -
Vivi968g00004 355 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi968g00004 1 269 NAC Transcription Factor Family AT5G09330 51.890 5.74e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi968g00004 NAM 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi968g00004 - - adu:107470479 461.455