Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi966g00009 ATGGGGATGGAGCAAAACAACATGATCGCACCGTTCATTATGAAGACATATCACATGGTTAACGAACCAAACACCGATAACCTTATCAAGTGGGGCCCATCTAACAACAGTTTCATCGTCCTCGACCCCCTCGAATTCTCTCACTCCCTTCTCCCTCTTTTCTTCAAACACAACAACTTCTCTAGCTTCGTTCGTCAACTCAACACCTACGGTTTCAGAAAAGTTGATCCGGATCGTTGGGAATTTGCGAATGAGTGGTTTCTTAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGAAAAAAGCACGTTGGTGGAGTTGGAAATGGAAGGAACAATAATAATAATAATAATAACTATTATTCTAACGAAGTGAAGTTTGAGGATTTTGAAGAAGATGAAGCTATGGTGACAGAAATATTGAAGCTGAAAGAAGAACAAAGAAATTTAGATGAAGAGCTTCAAGGGATGAACAAGAGATTAGAAACAACAGAGAAACGACCACAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAGATTCTGTCTAGGATACTTAACCAGAGAGAGAAGCAAATAGTTCTTGATAAGAAAAAAAGACGGTTGATATCTCCGGTGACTACCTCGACTTCCTCGGACTCGTCTGGCATGGCGGTTGGGAGTTTTGTCAAGACGGAGTTTGAGGAAGACGAGGTAACCGTTGCTAATAATATGATGTCGTCGTCGCCGGAGACGGGTTTCGAAATTGATTATTTCCACCGTGCGCCGCCGTTGGGAGTGACGCCGGCGGTGGGAGGTTGGTGGGGTCAGACGCAGATTGGACAAATGGGGTATGGATATGATTGCAAAGTTTCTCCGACGCCGTTGACGGAAGTGTCTCCGGCGGCACCGTTTATGGGGGGTGTGAATAGTGGCGATGGTAAAATGGGGGGTGTGGAAATTTTCAGTGAAATAGCGGCGGAGAATAGTTCGTTGCCACCTTATCCCTTTTCTTTGTTGGATGGTGGCTTTTAG 1023 0.4418 MGMEQNNMIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRKKHVGGVGNGRNNNNNNNNYYSNEVKFEDFEEDEAMVTEILKLKEEQRNLDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNQREKQIVLDKKKRRLISPVTTSTSSDSSGMAVGSFVKTEFEEDEVTVANNMMSSSPETGFEIDYFHRAPPLGVTPAVGGWWGQTQIGQMGYGYDCKVSPTPLTEVSPAAPFMGGVNSGDGKMGGVEIFSEIAAENSSLPPYPFSLLDGGF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi966g00009 340 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi966g00009 340 Coils Coil 140 167 - -
Vivi966g00009 340 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi966g00009 340 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi966g00009 340 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi966g00009 340 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi966g00009 340 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi966g00009 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 230 IPR027725 -
Vivi966g00009 340 FunFam Heat stress transcription factor B-4 4 102 - -
Vivi966g00009 340 Gene3D - 4 102 IPR036388 -
Vivi966g00009 340 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi966g00009 8 340 HSF AT3G24520 42.241 9.22e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi966g00009 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi966g00009 K09419 - gmx:100794896 379.407