LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi963g00005	ATGTCCACCTCTAGAGCCTCATCAAACGCTTCCCTCAAAGGACATGACCATCATCACAATCAACCTCAAATAAACTTATCTCTACTTCAACGGAACACGTCGATTTACAGCGACAAAAGAGGAAGAAGAAAACAAGTAGAACCAGGTAGGTTTCTTGGTGTAAGGAGAAGACCTTGGGGTAGATATGCAGCTGAAATCAGAGATCCTAATACTAAAGAAAGACATTGGTTAGGAACTTTTGATACTGCTCAAGAAGCTGCTTTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTAGCGATGCTAAAACAAATTTCATATATTCAACTTCTTCTCAATCTGATGAAACCAATCTTCACAACGTTGTTGTTAATCCTTTAGATCCTCAAAAAACACAACCAGTTACAAATCAAACTAGCCTTAGTAATTCTCATTTGAACAATGAAAATTTGTTCTTCTCTGATGATTCTACTAACTCAGCCTATCTTGAATGCATTGTTCCGGTTAACTGTTTCAACCCTATTTCAAATACCAAAAATTCAAACTTTGATCATAAGAGCAATGCAAGTGGTTCAAGTGAACATCGCGAAAACGTTGTTGATTCCATTAGTACAGCAAATTTCATGCAGGGTCAATCATATTTTGACAACAATGCATTCTCTCAAGAAGCATTATACATGGACACAAGTGAAAGTAGTGAAGGATTATGGGATTGCAATTACAATGAACTATCAGCTATTTTTAACAAACCTTTGAGTAATGAAAGTTCAAACTATGAACTAATGACAACTCATGATGTTTCTTCATATTCTTCTTTTGGCGAAGTTGACATGGAATACTCGCTCTTTTGA	852	0.3615	MSTSRASSNASLKGHDHHHNQPQINLSLLQRNTSIYSDKRGRRKQVEPGRFLGVRRRPWGRYAAEIRDPNTKERHWLGTFDTAQEAAFAYDRAALSIKGSDAKTNFIYSTSSQSDETNLHNVVVNPLDPQKTQPVTNQTSLSNSHLNNENLFFSDDSTNSAYLECIVPVNCFNPISNTKNSNFDHKSNASGSSEHRENVVDSISTANFMQGQSYFDNNAFSQEALYMDTSESSEGLWDCNYNELSAIFNKPLSNESSNYELMTTHDVSSYSSFGEVDMEYSLF	283

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi963g00005	283	SUPERFAMILY	DNA-binding domain	51	108	IPR016177	GO:0003677
	Vivi963g00005	283	FunFam	Ethylene-responsive transcription factor 2	50	108	-	-
	Vivi963g00005	283	Gene3D	AP2/ERF domain	50	108	IPR036955	GO:0003700\|GO:0006355
	Vivi963g00005	283	ProSiteProfiles	AP2/ERF domain profile.	50	107	IPR001471	GO:0003700\|GO:0006355
	Vivi963g00005	283	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	25	202	-	-
	Vivi963g00005	283	SMART	rav1_2	50	113	IPR001471	GO:0003700\|GO:0006355
	Vivi963g00005	283	MobiDBLite	consensus disorder prediction	1	29	-	-
	Vivi963g00005	283	PRINTS	Ethylene responsive element binding protein signature	51	62	IPR001471	GO:0003700\|GO:0006355
	Vivi963g00005	283	PRINTS	Ethylene responsive element binding protein signature	73	89	IPR001471	GO:0003700\|GO:0006355
	Vivi963g00005	283	Pfam	AP2 domain	53	99	IPR001471	GO:0003700\|GO:0006355
	Vivi963g00005	283	CDD	AP2	50	106	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi963g00005	19	283	AP2-EREBP Transcription Factor Family	AT5G18560	33.051	1.53e-44	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vivi963g00005		AP2	1.5e-11	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi963g00005	-		-	mtr:11443354	410.223