Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi963g00003 ATGGACCATTATCCCCGGTCCGTTGAGCCTTCTCGCTCTGATCCGTCGCCGGAATGGACCGGACCCGACCCCCAGACCGGTCTCGAAGAACCTATGTGGCAATTGGGGCTAGGTGCTGGAGAGGATTCGTATCCACTACGACCCGATGAAGCTGATTGCACTTACTATTTGAGAACAGGCTTCTGTGGCTTTGGTTCTAGGTGTCGGTTCAACCATCCTCGTGACCGTAGCGCGGTTATTGGAGCTGCTTCTAGGATTGTAGGAGAGTATCCAGAACGTGCAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCGTCTTGCAAGTACCATCATCCTAGACAGGCAGGAGGCACTGATGCTAGTCCTGTGTCACTAAATTATTATGGATATCCACTACGTCCGGGTGAAAAGGAGTGTTCCTATTTTGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCAGTTCCTCCTGGTGTCCAAATTCAAGCTCCATCACCTGTTCCCCCAGTTTCACCTTTACATGTACAAGTACCTGCCCCAATATATCCAACCGTACAGCCTCCATCTGGTCCTTCATCACAACAAATTGGTGTACTGGTCGCTAGGCCACCTCTACTACCTGGTTCGTTTGTCCAGAGCCCTTATGGACCTGTAGTATTGTCCCCAACCATGGTCCCCTTTTCTGGCTGGAGTCCTTATCAGGCTACTGCAACGAGCCCTGTACTTCCTTCTGGCAATCCTGCTAATGTTAGTTCCACACAGCTTTATGGCATAAGCCAGCTACCTTCACCAGGTAATGCCTATACCGGACCTTATCAACCTTCTGCTTCCTCGGTTGGTCCTTCAAGCAGAGGTCATAATGAGCAGTCGTTTCCAGCTAGGCCTAATCAACAAGAATATCATTATTACTCTAAACCAGAGGAGCTTTCATTTGGTCCATCATATAGGTATAACCAACCTCCAGACATGAGTGCACAAAAAGCGAATGTTGTCCTTGGTCCTGCAGGTCTTCCTTTACGCCCGGGGGCAGCACCTTGCGCTCATTACACACAGCGTGGTATATGCAAATTTGGTCCCACATGCAAATTTGATCATCCTATTGCATCACTGAGTTACAGTCCATCTGCTTCTTCCCTGACTGATGTGCCAGTTGCACCACACTTTGTGGGTTCATCTGTTGGTACTCTTGTTCCTTCATCTTCTTCATCAGAATTGCAGCCGGAACTTACCACAGTATCCAGTGGAGAATCTGTTCCATCCAGAATACCTTCATCAGCTAGCACTACAACTGGATCAGTTGGCTTGAATTTGTCAACTGGAGGCCCTGTTTCTCAATCCAGCACGCGGAGTTCTAGTCCGTTACCAGCTGCCAACACCACAAGTAGTAATGTCTCTCACACCTCAAGTTAA 1446 0.482 MDHYPRSVEPSRSDPSPEWTGPDPQTGLEEPMWQLGLGAGEDSYPLRPDEADCTYYLRTGFCGFGSRCRFNHPRDRSAVIGAASRIVGEYPERAGQPVCQYYMRTRSCKFGASCKYHHPRQAGGTDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPPGVQIQAPSPVPPVSPLHVQVPAPIYPTVQPPSGPSSQQIGVLVARPPLLPGSFVQSPYGPVVLSPTMVPFSGWSPYQATATSPVLPSGNPANVSSTQLYGISQLPSPGNAYTGPYQPSASSVGPSSRGHNEQSFPARPNQQEYHYYSKPEELSFGPSYRYNQPPDMSAQKANVVLGPAGLPLRPGAAPCAHYTQRGICKFGPTCKFDHPIASLSYSPSASSLTDVPVAPHFVGSSVGTLVPSSSSSELQPELTTVSSGESVPSRIPSSASTTTGSVGLNLSTGGPVSQSSTRSSSPLPAANTTSSNVSHTSS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi963g00003 481 MobiDBLite consensus disorder prediction 276 308 - -
Vivi963g00003 481 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Vivi963g00003 481 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Vivi963g00003 481 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vivi963g00003 481 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Vivi963g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Vivi963g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 378 IPR000571 GO:0046872
Vivi963g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Vivi963g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Vivi963g00003 481 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Vivi963g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vivi963g00003 481 PANTHER PROTEIN PHOSPHATASE RELATED 38 399 - -
Vivi963g00003 481 SUPERFAMILY CCCH zinc finger 355 382 IPR036855 GO:0046872
Vivi963g00003 481 Gene3D - 47 125 - -
Vivi963g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Vivi963g00003 481 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Vivi963g00003 481 MobiDBLite consensus disorder prediction 407 481 - -
Vivi963g00003 481 MobiDBLite consensus disorder prediction 1 31 - -
Vivi963g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Vivi963g00003 481 Gene3D - 126 175 - -
Vivi963g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Vivi963g00003 481 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi963g00003 9 439 C2H2 Transcription Factor Family AT5G18550 53.215 1.76e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi963g00003 zf-CCCH 2.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi963g00003 - - gmx:100812433 683.715