Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi960g00001 ATGGAGGAAGTTCAGAGAAGTTTAAATTCCATTTCTCCTTTTTTGTCTAAGACTTATATGATGGTTAGTGATCCTTCCACTAATGCCATTGTTTCATGGAGTTCTACTAATCGGAGTTTCGTTGTTTGGAATCAACCTGATTTTTCGAAGAATTTGTTGCCTAAATTCTTTAAGCATAATAACTTCTCGAGTTTCGTAAGACAGCTTAACACCTATGGCTTTAGAAAGGTTGGTCATGAACAATGGGAATTCGCAAACGAAGATTTTGTAAGAGATCAACCACATCGTTTGAAGAATATCCACAGGCGCAAAGCAGTTTTTAGCCATTCGCGTAATGCTAATGGCCAACGGGCGGCTGGTGCTGCTCCATTAACAGAATCAGAACGTCGGAATTATAAAGCTCAGATAGAAAAACTTAAGCAGGAAAAAGAACAACTGCTGATCGAACGTCAGAAGCAAGAAGAGGAGTGGAAACAGAATGAGATGCAGTTGCATTACTCGAAGGATCGCTTGCAACAGCTGGAACTGAATCAACAAAGTTTGCTCGCTTCAGTTGGTCAAGTGCTGCAGAAATCGGCGGAGGATACAAGTCTTCAGCCACTGTCGGGAGACACTGGCAGAAAACGAAGTTATCTGCCAAATGCTCCCTTTAATGATTTATCTAGCATTGAAACTCGGAAGGAAACTTCTCCTGAGTTAGCTAGAGAAAATGCTGAGAGTATGACCGTTCTCTCTGTAAACATGGAACGATTGGATCTGCTCGAATCATCGTTGTCGTTTTGGGAGAATTTTGTAAAGGAAGTTAGCGACACATCTCATGAAACTCGTTCGAACTTAGACTTTGATGATTCGATGAATCGTGCTCATAGTCCCGTAATGTCTGGTGTGCAAATAGGCTTTGAAGATCAGCCCGAGTCATCAGGAAACGAAATAAACTCGCTGTTAGATATAGTCGATATTCCTGATCTCGATCCTCTTGAACTTGACCTGGACGATATCTTTGTTCATGATCCCGTTGCACCCGAGCCAGCTATTATCGCGGTTCCTGATCCCGATCCTGTTGCACCTGAGACAGCTTTTATCGTGGTTCCTGATTCCCCTGCACCTGAGCCGGCTGTTACCGCGGTTCCTGATTCAGTTGCACCCGAGCCACCTGTTATCAACATTCCTGATTCCCCTGTACCAGAGCCGGCGGTTACAGTAATTCCCGACTCTGCTGCACCGAACGAACAGGCTGCCGCAACAACCCTGGGTACTAATGAATTTAATATACCATTTTGGCAAAAACTGTTGATGGAAAACCCTGATGAGGATGAATCAGAAAGTGCTTCTGAACTTAGCAAATATTGCTGGAGCCGCAGGAGTCTTAAGCCCCGTCAAATTGATAAAGCAGGGAAAGCTTAG 1404 0.4387 MEEVQRSLNSISPFLSKTYMMVSDPSTNAIVSWSSTNRSFVVWNQPDFSKNLLPKFFKHNNFSSFVRQLNTYGFRKVGHEQWEFANEDFVRDQPHRLKNIHRRKAVFSHSRNANGQRAAGAAPLTESERRNYKAQIEKLKQEKEQLLIERQKQEEEWKQNEMQLHYSKDRLQQLELNQQSLLASVGQVLQKSAEDTSLQPLSGDTGRKRSYLPNAPFNDLSSIETRKETSPELARENAESMTVLSVNMERLDLLESSLSFWENFVKEVSDTSHETRSNLDFDDSMNRAHSPVMSGVQIGFEDQPESSGNEINSLLDIVDIPDLDPLELDLDDIFVHDPVAPEPAIIAVPDPDPVAPETAFIVVPDSPAPEPAVTAVPDSVAPEPPVINIPDSPVPEPAVTVIPDSAAPNEQAAATTLGTNEFNIPFWQKLLMENPDEDESESASELSKYCWSRRSLKPRQIDKAGKA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi960g00001 467 Coils Coil 122 156 - -
Vivi960g00001 467 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Vivi960g00001 467 Gene3D - 6 104 IPR036388 -
Vivi960g00001 467 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi960g00001 467 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi960g00001 467 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi960g00001 467 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi960g00001 467 MobiDBLite consensus disorder prediction 192 218 - -
Vivi960g00001 467 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi960g00001 467 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi960g00001 467 MobiDBLite consensus disorder prediction 108 129 - -
Vivi960g00001 467 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 235 IPR027725 -
Vivi960g00001 467 FunFam Heat shock transcription factor 1 7 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi960g00001 7 306 HSF AT4G18880 46.205 4.50e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi960g00001 HSF_DNA-bind 2.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi960g00001 K09419 - gmx:100820566 346.28