Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi95g00022 ATGGCTAGTGAAATTCCTCTGGTGGAACCAATCCACTTCATACTTACTCAAAGCTTTCATCATCAAAAATTTATGATGCCATGTAAGTTTGTGAAGAAATATGGAAAAAGTTTACCGAAAGATATTTATCTAAACACTCCAAATGGTGAAAAATGGAAAATATATTTGGTAAAAAGTGATGGCAAAATATGGTTTGGAAGTGGTTGGAAAGAATTTGCAAAGTTCCATTCGCTATCTTATTACCATCTTCTAGTTTTCAGATACGAAAGCACTTCGAGTTTTGAGGTACAAATCTTTGATAAGACTGCTTCTGAGATAAACTACCCTCATAAAAGAATTGAAGCTGAAAAGGTTTCTAATAGTAAAGAAGATTGTCGAGAAAATCAAAAGAGAAAAGCTTACTCCTCCTTTGAATTTGGAAGCAGCAGTTGTGTTAAAGTCAGGAAATCACAAAATCATATTGACAAAAAACGTAAAGGAAAACCAGTGACTAATGCTGAGAAAAATACAACTCTTGAAAGAGCCAAAGAGTTGAAAACAAGTAATCCATACTTTGTTCTTGTCATGGGTGCATCATACGTTGAGCATCATTTTCTTTTGACTATACCATGTGAATTTGGTAAGAGACACTTTGATTTGGATAAGAAGAAAGGAGATATTTATTTTCAGGTGTTGGATCATGGATTAGTTTGGCATGCAAAGTACACAATTAGGATGAGCACTACAGGACTAAAATTTGAACTCTCAAGGAAATGGAGAGAATTTGTAAAAGACAATAACTTGAAAGTTGGTGATGTTTGCAACTTTGAGCTCATTCATCAAACTAATATGACTTTTCAAGTTCACATCTTTAGAACAACAGATGAAGTCAACACTAAATGTTCAACTTCTCAAAGTAGGTTTAATTATTAA 912 0.3322 MASEIPLVEPIHFILTQSFHHQKFMMPCKFVKKYGKSLPKDIYLNTPNGEKWKIYLVKSDGKIWFGSGWKEFAKFHSLSYYHLLVFRYESTSSFEVQIFDKTASEINYPHKRIEAEKVSNSKEDCRENQKRKAYSSFEFGSSSCVKVRKSQNHIDKKRKGKPVTNAEKNTTLERAKELKTSNPYFVLVMGASYVEHHFLLTIPCEFGKRHFDLDKKKGDIYFQVLDHGLVWHAKYTIRMSTTGLKFELSRKWREFVKDNNLKVGDVCNFELIHQTNMTFQVHIFRTTDEVNTKCSTSQSRFNY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi95g00022 303 PANTHER B3 DOMAIN-CONTAINING 19 281 - -
Vivi95g00022 303 Gene3D - 10 103 IPR015300 -
Vivi95g00022 303 CDD B3_DNA 183 285 IPR003340 GO:0003677
Vivi95g00022 303 CDD B3_DNA 14 100 IPR003340 GO:0003677
Vivi95g00022 303 SMART B3_2 185 287 IPR003340 GO:0003677
Vivi95g00022 303 SMART B3_2 11 102 IPR003340 GO:0003677
Vivi95g00022 303 ProSiteProfiles B3 DNA-binding domain profile. 185 287 IPR003340 GO:0003677
Vivi95g00022 303 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Vivi95g00022 303 SUPERFAMILY DNA-binding pseudobarrel domain 13 109 IPR015300 -
Vivi95g00022 303 Gene3D - 162 290 IPR015300 -
Vivi95g00022 303 SUPERFAMILY DNA-binding pseudobarrel domain 180 286 IPR015300 -
Vivi95g00022 303 Pfam B3 DNA binding domain 185 286 IPR003340 GO:0003677
Vivi95g00022 303 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi95g00022 163 288 B3 DNA Binding Superfamily AT3G18990 28.571 7.23e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi95g00022 B3 5.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi95g00022 - - vvo:131627623 600.127