Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi95g00020 ATGGCTAGTGAATTATTTGAGATGAAAAAACCAATTCATTTTTTCAAAATCATAGTTATTCAAAGTCTTCATCAAGAAAAGCTAATGATACCAAGAAGGTTTGTGAAGAAATATGGAGAATATCTTCCAAAAGCTATATGTCTAAAGACTCCTAACGGTGCATATTGGAAACTAAGTTTGGTAAAAAGTGATGGCAAGATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTATCTCATGGCCATCTTCTTGTTTTCAAATACCAAAAAACTTCCCATTTTGAAGTAAGAATCTTTGATAAGAGTGCTTTAGAAGTAAACTATTCTATCAAAAGAATTGAAGCTAATAATAAAGAAGATTGTAGAGCAACTCAAAAGAGAAAAGCTTATTCCTCCTTTGAAATTGGAAGCACTAGTTGTGTCAAAAAGCCCAAAGGTAAAAATCTTATTGCAGGAAAGCGCGGGAATACAACACTTGAAAGAGCGAAATCATTCAGAACATGTAATCCATCTTTTATTGTTGTCATGGGTGCATCATACGTTGAACACCATTTTCTTTTGAGTATACCATCTGAATTTGGTAAGAAAAACTTTGATTTGGATATGAAGAGAGGGTATATTTGTTTTCAGGTATCAAACAATGAAAAAACTTGGCCTGCAAAGTACACAAGGAGGATATCCAATAAAGGAAGAATAAAGTTTGAAATCACAGGTGGATGGAAGAAATTCTCAGAGGACAATAATTTGAAAGTTGGTGATGCATGCAATTTTGAGCTCATTCTTAAAACTAATATGACCTTCCTTGTTCACATTTTTAGAGAGACATCAAATAGTAGTAGTAGTTGTAGTAGTAGTAGTAGTAGTAGAGTTTGTTTGGAGCTAAGTGGGGGAGAAGCGGTGCTTTTCGGTTATGCTTCGGTTGTAAGTTGTTGGTGCAATGTACTGCTTAAGGAGACAATACAAGTATTGTCTGAGCTCGTTGACATGGATTCAAGGTTCTGGTTGTTTAAGAAGCTTGTAGCATCTGTAGAAGGAGAATGA 1053 0.3466 MASELFEMKKPIHFFKIIVIQSLHQEKLMIPRRFVKKYGEYLPKAICLKTPNGAYWKLSLVKSDGKIWFEKGWKEFAEYHSLSHGHLLVFKYQKTSHFEVRIFDKSALEVNYSIKRIEANNKEDCRATQKRKAYSSFEIGSTSCVKKPKGKNLIAGKRGNTTLERAKSFRTCNPSFIVVMGASYVEHHFLLSIPSEFGKKNFDLDMKRGYICFQVSNNEKTWPAKYTRRISNKGRIKFEITGGWKKFSEDNNLKVGDACNFELILKTNMTFLVHIFRETSNSSSSCSSSSSSRVCLELSGGEAVLFGYASVVSCWCNVLLKETIQVLSELVDMDSRFWLFKKLVASVEGE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi95g00020 350 SUPERFAMILY DNA-binding pseudobarrel domain 172 278 IPR015300 -
Vivi95g00020 350 ProSiteProfiles B3 DNA-binding domain profile. 176 279 IPR003340 GO:0003677
Vivi95g00020 350 Gene3D - 155 280 IPR015300 -
Vivi95g00020 350 SMART B3_2 14 106 IPR003340 GO:0003677
Vivi95g00020 350 SMART B3_2 176 279 IPR003340 GO:0003677
Vivi95g00020 350 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Vivi95g00020 350 Pfam B3 DNA binding domain 176 278 IPR003340 GO:0003677
Vivi95g00020 350 Gene3D - 6 107 IPR015300 -
Vivi95g00020 350 CDD B3_DNA 174 277 IPR003340 GO:0003677
Vivi95g00020 350 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vivi95g00020 350 PANTHER B3 DOMAIN-CONTAINING 9 274 - -
Vivi95g00020 350 CDD B3_DNA 13 104 IPR003340 GO:0003677
Vivi95g00020 350 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi95g00020 14 124 B3 DNA Binding Superfamily AT4G01580 39.640 8.39e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi95g00020 B3 1.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi95g00020 - - vvo:131624179 694.501