Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi95g00017 ATGGATAGTGAATTATCTGAGTTGAAAAAACCAATTCATTTTTTCAAGATCATAGTTACTCAAAGTCTTCATCAAGAAAAGCTTATGATACCAAGAAAGTTTGTGAAGAAATATGGAGAATATCTTCCAAAAGCTATATGTCTAAAGACTCCCAATGGTGCAGACTGGAAAATTAGTATAGTAAAAAATGATGGAAACAAATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGACTATCATTCTCTATCTCATGGCCATCTTCTTGTTTTCAAATATGAAACAACTTCCCATTTTGAAGTAAGAATCTTTGATAAGAGTGCTTTAGAGATAAAATATCCTGAAGTCAACAATGATGAAGATTGTAGGGTAAGTCAAAAGAGAAAAGCTTACTCCTCCTTTGAAATTGGAACCACTAGTCGTGTTAAAAAAGACAAAGGAAAACAAGGGAATACAGCACTTGAAAGAGCAGAAGAGTTCAAAACATGCAATCCATCATTTGTTGTTGTCATGGGTGCATCTTATGTTGGAGGCCGTTTTCTTTTGTTTATACCTTCCATGTTTGGCAAGGCACACTTTGATATGAACAAGGAGAAAGGATATATTTATTTCCAGGTGTTGGATCATGGATTAGTTTGGCCTGCAAAGTACTCAACCTGCAGAAGGTGCAATGGAGGAATAATGTTTGAAGTTACAAGTGGGTGGAAGGAATTCTCAATGGACAATAGTTTGAAAGTTGGTGATGTTTGCAAATTTGAACTCATTCTTAGAACTAATATGACCTTTCATGTTCACATTTTTAGAAACACAAATGAAGTCAACGCAGATTGTTCAACAACATCTGCAAATGGGATTATTGTCCTATGA 864 0.3484 MDSELSELKKPIHFFKIIVTQSLHQEKLMIPRKFVKKYGEYLPKAICLKTPNGADWKISIVKNDGNKWFEKGWKEFADYHSLSHGHLLVFKYETTSHFEVRIFDKSALEIKYPEVNNDEDCRVSQKRKAYSSFEIGTTSRVKKDKGKQGNTALERAEEFKTCNPSFVVVMGASYVGGRFLLFIPSMFGKAHFDMNKEKGYIYFQVLDHGLVWPAKYSTCRRCNGGIMFEVTSGWKEFSMDNSLKVGDVCKFELILRTNMTFHVHIFRNTNEVNADCSTTSANGIIVL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi95g00017 287 ProSiteProfiles B3 DNA-binding domain profile. 166 269 IPR003340 GO:0003677
Vivi95g00017 287 SUPERFAMILY DNA-binding pseudobarrel domain 159 268 IPR015300 -
Vivi95g00017 287 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vivi95g00017 287 Gene3D - 6 107 IPR015300 -
Vivi95g00017 287 PANTHER B3 DOMAIN-CONTAINING 9 263 - -
Vivi95g00017 287 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Vivi95g00017 287 CDD B3_DNA 164 267 IPR003340 GO:0003677
Vivi95g00017 287 Gene3D - 145 271 IPR015300 -
Vivi95g00017 287 CDD B3_DNA 13 104 IPR003340 GO:0003677
Vivi95g00017 287 Pfam B3 DNA binding domain 166 268 IPR003340 GO:0003677
Vivi95g00017 287 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Vivi95g00017 287 SMART B3_2 166 269 IPR003340 GO:0003677
Vivi95g00017 287 SMART B3_2 14 106 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi95g00017 14 134 B3 DNA Binding Superfamily AT1G49475 40.323 3.67e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi95g00017 B3 8.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi95g00017 - - vvo:131624168 554.673