Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi95g00010 ATGGGTAGTGATTTTCCTCCGATTCATTTTTTCAAGATAATAGTTAGCGAAAGTCTTGATCAAGGAAAGCTTATGATACCAAGAAAGTTTGTGAAGAAATATGGAGAATATCTTCCAAAAGCTATATGCCTAAAGACTCCCAATGGTGCAGATTGGAAACTAAGAGCCCTAAGTTTGGTAAAAAGTGATGGCAAGATATGGTTTGAAAATGGTTGGAAAGAATTTGTAGACTATCATTCTCTATCTCATGGCCATCTTCTTGTTTTCAAATATGAAAAAACTACCCATTTTGAGGTAACAATCTTTGCTAAGAGTGGTTTAGAGATAAGCTATCCTTTCAAAAGAGTTGAAGTCAACAATGAAAAAGATTGTAGAGCAAGTCAAAAGAGAAAAGCATACTCCTCCTTTGAAATTGGAGGCACTAGTTATGTCAAAAAGCGCAAAGGAAAACATGTGAATGCAACACTTGAAAGAGCAAAATCATTAAAAACATGTAATCCATTCTTTGTTCTTGTCATGCATGCTTCATACATTGAACACCATTCTGGTTTGAATATACCTTCTGAATTTGGTAGGAAACACTTTGATTTGGATAAGAAGAAGGGAGAAATTTATTTTCAGGTGTTGGATAATGATAGAGTCTGGTCTGCAAAGTACTCAATCGGGATGAAATTGGACACTACACAAGTAAGATTTCAACTCTCAAGGAAATGGAGGGAATTTGTAAAAGACAATAACTTAAAAGTTGGTGATGTTTGCAACTTTGAGCTCATTCATAAAACTAATATGACTTTTCAAGTTCACATTGTTAGAAAGACTGATGAAGTGAACGTCAACGTCTCATAG 846 0.3463 MGSDFPPIHFFKIIVSESLDQGKLMIPRKFVKKYGEYLPKAICLKTPNGADWKLRALSLVKSDGKIWFENGWKEFVDYHSLSHGHLLVFKYEKTTHFEVTIFAKSGLEISYPFKRVEVNNEKDCRASQKRKAYSSFEIGGTSYVKKRKGKHVNATLERAKSLKTCNPFFVLVMHASYIEHHSGLNIPSEFGRKHFDLDKKKGEIYFQVLDNDRVWSAKYSIGMKLDTTQVRFQLSRKWREFVKDNNLKVGDVCNFELIHKTNMTFQVHIVRKTDEVNVNVS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi95g00010 281 SMART B3_2 10 105 IPR003340 GO:0003677
Vivi95g00010 281 SMART B3_2 169 273 IPR003340 GO:0003677
Vivi95g00010 281 SUPERFAMILY DNA-binding pseudobarrel domain 165 271 IPR015300 -
Vivi95g00010 281 CDD B3_DNA 9 102 IPR003340 GO:0003677
Vivi95g00010 281 ProSiteProfiles B3 DNA-binding domain profile. 9 105 IPR003340 GO:0003677
Vivi95g00010 281 Gene3D - 148 276 IPR015300 -
Vivi95g00010 281 PANTHER B3 DOMAIN-CONTAINING 5 265 - -
Vivi95g00010 281 Pfam B3 DNA binding domain 169 272 IPR003340 GO:0003677
Vivi95g00010 281 Pfam B3 DNA binding domain 10 104 IPR003340 GO:0003677
Vivi95g00010 281 Gene3D - 5 106 IPR015300 -
Vivi95g00010 281 ProSiteProfiles B3 DNA-binding domain profile. 169 273 IPR003340 GO:0003677
Vivi95g00010 281 SUPERFAMILY DNA-binding pseudobarrel domain 7 112 IPR015300 -
Vivi95g00010 281 CDD B3_DNA 167 271 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi95g00010 117 274 B3 DNA Binding Superfamily AT3G18990 28.125 6.46e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi95g00010 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi95g00010 - - vvo:131624179 383.645