Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi95g00008 ATGGCTTGTGAATTATCTGAGTTGAAAAAACCAATTCATTTTTTCAAGATCATAGTTACTCAAAGTCTTCATCAAGAAAAGCTCATGATACCAAGAAAGTTTGTGAAGAAATATGGAGAATATCTTCCAAAAGCTATATGTCTAAAGACTCCCAATGGTGCAGACTGGAAAATTAGTATAGTAAAAAATGATGGAAAGATATGGCTTGAAAAGGGTTGGAAAGAATTTGCAGACTCTCATTCTCTATCTCATGCCCATCTTCTTGTTTTCAAATATGAAACAGCTTCCCATTTTGAGGTAAGAATCTTTGATATGAGTGCTCTAGAGATAAAATATCCTGAAGTCAATAATGAAGAAGATTGTAGAGCAAGTCAAAAGAGAAAATCTTACTCCTCCTTTGAAATTGGAAGTACTAGTTGCGTTAAAAAAGACAAAGGAAAACAAGGGAATACAGCACTTGAAAGAGCAGAAGAGTTCAAAACATGCAATCCATCATTTGTTGTTGTCATGGGTGCATCTTATGTTGGAGGCCGTTTTCTTTTGTTTATACCTTCCATGTTTGGCAAGGCACACTTTGATATGAACAAGGAGAAAGGATATATTTATTTCCAGGTGTTGGATCATGGATTAGTTTGGCCTGCAAAGTACTCAACCTGCAGAAGGTGCAATGGAGGAATAATGTTTGAAGTTACAAGTGGGTGGAAGGAATTCTCAATGGACAATAGTTTGAAAGTTGGTGATGTTTGCAAATTTGAACTCATTCTTAGAACTAATATGACCTTTCATGTTCACATTTTTAGAAACACAAATGAAGTCAACGCAGATTGTTCAACAACATCTGCTAGAGTCTCATTCTTTCTCATTTCTATGCCAATTCCTCTTCTTTTCTCATGA 894 0.3535 MACELSELKKPIHFFKIIVTQSLHQEKLMIPRKFVKKYGEYLPKAICLKTPNGADWKISIVKNDGKIWLEKGWKEFADSHSLSHAHLLVFKYETASHFEVRIFDMSALEIKYPEVNNEEDCRASQKRKSYSSFEIGSTSCVKKDKGKQGNTALERAEEFKTCNPSFVVVMGASYVGGRFLLFIPSMFGKAHFDMNKEKGYIYFQVLDHGLVWPAKYSTCRRCNGGIMFEVTSGWKEFSMDNSLKVGDVCKFELILRTNMTFHVHIFRNTNEVNADCSTTSARVSFFLISMPIPLLFS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi95g00008 297 PANTHER B3 DOMAIN-CONTAINING 9 263 - -
Vivi95g00008 297 SUPERFAMILY DNA-binding pseudobarrel domain 159 268 IPR015300 -
Vivi95g00008 297 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vivi95g00008 297 ProSiteProfiles B3 DNA-binding domain profile. 166 269 IPR003340 GO:0003677
Vivi95g00008 297 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Vivi95g00008 297 CDD B3_DNA 164 267 IPR003340 GO:0003677
Vivi95g00008 297 SMART B3_2 14 106 IPR003340 GO:0003677
Vivi95g00008 297 SMART B3_2 166 269 IPR003340 GO:0003677
Vivi95g00008 297 CDD B3_DNA 13 104 IPR003340 GO:0003677
Vivi95g00008 297 Gene3D - 6 107 IPR015300 -
Vivi95g00008 297 Gene3D - 145 271 IPR015300 -
Vivi95g00008 297 Pfam B3 DNA binding domain 14 104 IPR003340 GO:0003677
Vivi95g00008 297 Pfam B3 DNA binding domain 166 268 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi95g00008 152 267 B3 DNA Binding Superfamily AT3G18990 31.897 1.41e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi95g00008 B3 9e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi95g00008 - - vvo:131624168 614.379