Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi959g00003 ATGAATTCTTTTGTGCAATGCAGTGTGTATAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCACTAGAGCTATTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAATCCTATGCATAATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTTCCCTTTTCTTCTCTTTTTATTGCTCTGTTGTTGTGTTCCACTCATTACCATCCTCCTTGGTTATGACATGAACATGGGATCCTCTTCTAGAGGTGCTTCGGAGGATCAAATCTCACAACTTCCATCTTGGAGATTTAAAGTTGGGCATACCAAATTAGATCTTGATAATGATTCTCAATGCAGCGAAAGATTGATCCGCGATGAGCCGGAATGTTGCATATGTTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAACTGCCTTGTTCACATATGTTCCATCTAAAATGTGTTGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAAAAAGAATTACAAAGGTAG 561 0.3797 MNSFVQCSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQILCIILLVWNAICYSFPFLLFLLLCCCVPLITILLGYDMNMGSSSRGASEDQISQLPSWRFKVGHTKLDLDNDSQCSERLIRDEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKKELQR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi959g00003 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Vivi959g00003 186 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 7 184 - -
Vivi959g00003 186 SMART ring_2 140 180 IPR001841 -
Vivi959g00003 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 185 IPR013083 -
Vivi959g00003 186 SUPERFAMILY RING/U-box 131 184 - -
Vivi959g00003 186 Pfam RING-like zinc finger 139 167 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi959g00003 11 184 C3H Transcription Factor Family AT4G26580 69.540 5.15e-79 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi959g00003 - - vvo:131626799 378.637