Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi959g00001 ATGGTTTCATTTTCTTCAAACTATGCAATAGGAGAAAATAGCATCATGGCTAGTACTAGTACAAGCATCCAAAACATGTCTCAACAAACTACTTTATCTCAATCCCAACCTTCTTTTATGACAAGAATGGCTATGAGGATATCAAGATCAAGATGGTTCACTTTTTTGAGAAGAGTGTTTCATTACCAAAATGGACCAAGATCTGATCTTGGTTCTAACCCTTTTAATTCTAGGACTTGGATGATGTTGGAGTTGGTGGCTTTATTGGTTCAAATTACAAGCACAACGTTTACTTTGGTGGTTTCAAAGAGTGAGAAGCCTGTTAGGCCTATGAGGGTGTGGGTTGTGGGATATGATGTTGGATGTGTTCTTAGTTTGTTGTTGCTTTGTGTTCGGTATTGTCAAATTGGTTTGAGTCATGGTGGTGAAGATGATGCTCTTGGTGTTTCTTATGATGTTGAACAACAATCAAATAATGAAGAGAACAGTGTGTATAGGAGCACACATTTGATGAGCAAGTGCAGAAGTTCACTAGAGCTATTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAATCCTATGCATAATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTTTCCTTTTCTTCTCTTTTTGTTGCTTTGTTGTTGTGTTCCGCTCATTACCATCCTCCTTGGTTATGACATGAACATGGGATCCTCTTCTAGAGGTGCTTCGGAGGATCAAATCTCACAACTTCCATCTTGGAGATTTAAAGTTGGGCATACCAAATTAGATCTTGACAATGGTTCTCAATGCAGTGAAAGATTGATCCGTGATGAGCCGGAATGTTGCATATGTTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTGCCTTGTTCACATATGTTCCATCTAAAATGTGTTGATCAATGGCTCAAAATCATATCATGCTGCCCTCTTTGTAAACAAGAATTAAGGTAG 1023 0.3803 MVSFSSNYAIGENSIMASTSTSIQNMSQQTTLSQSQPSFMTRMAMRISRSRWFTFLRRVFHYQNGPRSDLGSNPFNSRTWMMLELVALLVQITSTTFTLVVSKSEKPVRPMRVWVVGYDVGCVLSLLLLCVRYCQIGLSHGGEDDALGVSYDVEQQSNNEENSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQILCIILLVWNAICYSFPFLLFLLLCCCVPLITILLGYDMNMGSSSRGASEDQISQLPSWRFKVGHTKLDLDNGSQCSERLIRDEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKIISCCPLCKQELR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi959g00001 340 Pfam RING-like zinc finger 294 322 IPR001841 -
Vivi959g00001 340 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 339 - -
Vivi959g00001 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 340 IPR013083 -
Vivi959g00001 340 SUPERFAMILY RING/U-box 286 339 - -
Vivi959g00001 340 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Vivi959g00001 340 SMART ring_2 295 335 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi959g00001 19 339 C3H Transcription Factor Family AT4G26580 61.371 1.57e-133 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi959g00001 - - gmx:100818715 505.368