Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi956g00030 ATGTCATTCACAGGAACTCTTGATAAATGTGCAGCTTGTGATAAAACTGTTTATGTTGTTGATTTGTTGACTCTTGAAAATATACCTTACCATAAAAGTTGCTTCAAATGCAGTCACTGCAAGGGAAATCTTACGATGAGCACCTACTCGTCAATGGATGGTGTTCTCTACTGTAAGACACATTTTGAACAGCTTTTCAAGGAATCAGGAAATTTCAGCAAGAATTTTCAAAATGCAAAGGCTTCTGAGAAACAAAATGAATCTATGAATAGGGCTCCCACCAGAATGTCCTCTATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCTTTGGAAAAGATGTCATTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGTTGCCCCCTTACACATTCATCCTATGCTGCCCTAGATGGTGTCCTCTATTGCAGGCACCATTTTCAACAGCTTTTCATGGAGAAAGGAAACTACAGTCATGTACTTCAAGCAGCTGCAAACAGAAAGAATGCAACTCCACCTCCTGAACCGGCCGAACCAGCTGATGGTGATGATGATGTTGAAACATCAAAGACGGCTGATGATGCTCATGAACCATCAAAGCCAGAAGAAGAAACTGAGGGAAAAAAGACAGAAGAAAAGTCCGAAACACATGAAACTTGA 696 0.4095 MSFTGTLDKCAACDKTVYVVDLLTLENIPYHKSCFKCSHCKGNLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQNAKASEKQNESMNRAPTRMSSMFSGTLDKCSVCTKTVYPLEKMSLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFQQLFMEKGNYSHVLQAAANRKNATPPPEPAEPADGDDDVETSKTADDAHEPSKPEEETEGKKTEEKSETHET 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi956g00030 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vivi956g00030 231 PANTHER OS06G0237300 PROTEIN 6 107 - -
Vivi956g00030 231 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Vivi956g00030 231 FunFam LIM domain and actin-binding 1 4 74 - -
Vivi956g00030 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vivi956g00030 231 FunFam LIM domain and actin-binding 1 101 171 - -
Vivi956g00030 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Vivi956g00030 231 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vivi956g00030 231 SMART lim_4 106 158 IPR001781 -
Vivi956g00030 231 SMART lim_4 9 61 IPR001781 -
Vivi956g00030 231 Gene3D Cysteine Rich Protein 104 171 - -
Vivi956g00030 231 MobiDBLite consensus disorder prediction 177 231 - -
Vivi956g00030 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Vivi956g00030 231 Gene3D Cysteine Rich Protein 5 103 - -
Vivi956g00030 231 MobiDBLite consensus disorder prediction 195 231 - -
Vivi956g00030 231 Pfam LIM domain 10 65 IPR001781 -
Vivi956g00030 231 Pfam LIM domain 107 162 IPR001781 -
Vivi956g00030 231 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vivi956g00030 LIM 6.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi956g00030 - - gmx:100779513 343.199