Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi955g00010 ATGATGGAACAACAAAACACCGTGAAAAACAACAAAACGACAAAAAACGAGGTTGTTCTTCGAATTTCAAACAACGAAGAAATCAGAGATTTTGAACGCACCCATGTTGCTGAAACCAGTTCTCATTCAAAAGGGTCTCATGCAGAAGAAGAACTCACAGAGCTTGAGAATCTCAGAAGCAGTAATGACCAAGTTTCCACAACCACTTTCTTGGGTCGGTCTGAATTCTCAAAGCCAAAAGCTAGAATGGTGGAACCACCATTTCCAAAAGATGCAAACTTTGTAGCAGACAAGACTCAAATCAAGAGTTCCAGTTCTCCAAACAAGAAGATTCTTCCAAGAGATGCTCCTGATGGAATTGGAACTGTCATTACTCCAAGAACTCCATTGATTGGTACTCCAAAGAAAGGAGAAGAAGAAGAGGATGATGATGAGGAAGAAGAAGTTTACAAGACTGCAGAAATTGAAGTGAGTAAGAGATCTGGTAAGAAGATGAAACTAATGAATTGGATTGAGTTGTTTGCATTTGTTTTAATTTTAGGGTTTTTGATTGCAAGCTTAATGGTTCATAAGTTGCAAGATAAGAAAATTTGGAGTTTAGAACTTTGGAAATGGTGTGTGCTTACATTAGTTATCATCTCTGGTAGATTAGTCACTAGTTGGTTTATGAATGTTCTGGTTTTCTTAATCGAAAGAAATTTCTTGTTTAAGAAGAAAGTCTTGTATTTTGTTTATGGTGTTAGGAAGAGTGTTCAAGCATTTATATGGTTGAGTTTGGTGCTTTTGGCATGGAGTTTAGTTTTCCATCATGGAGTTAAGAGAACAAGAAAAGTTACTAGGATTCTTGGTTACATCACAAAAGCACTTGGTTCTTTTGTTATTTCGGCCGCTATATGGTTGGTGAAAACTTTGTTGATTAAGCTATTGTCTTCGCATTTTCAATCGACTAGGTTTTTTGATAGGGTTCAAGAATCGATTTTTCATCAGTATATTCTTAGGACTCTTTCTGGTCCTCCTTTGATGGAGATGGCGGAGATGGTGGGGAAGAGTTCGAGTAGGGGGCGGATTAGTTTCAAGACGTTGGTTAGAGATAGTGAGAAGAAAGGGAAGAAAGAACAAGCGCAAGTTATTGATGTGGAGAAGCTTAAGAAAATGAAACAAAAGAAAGTTTCGGCTTGGACTATGAAAGGGTTGGTTGATGTCATTAGGAGTTCTGGATTATCTACCATTAGTTATACGCCGGAGAGTATCTATGAAGAAGAGAGTGATCCGAAAGATAGTGAAATTACTAGTGAGTGGGAAGCAAAGGCGGCGGCTTATCGGATTTTCAGGAATGTTGCTAAGGCAGGAAGCAAGTACATTGAGAAGGAAGATCTATTGCGGTTTATGAAAATTGAAGAAGTGGAAAATTTGCTTCCACTATTTGAAGGAGCAGTTGGGACTGGAAGAATTAAGAGGAAGTCTCTCAAGAATTGGCTGGTGAAAGTCTACCTAGAACGCCAATCACTTGTACATTCACTAAACGATGCCAAAACAGCTGTTGATGAATTGAATAACATTGCTTCTGCAATTGTCCTCGTTTTGGCCGTCATTGTGTTGTTGCTTGTGATGGGATTCTTAACAACCCAAGTTCTTGTCTTCATTTCATCACAGCTTTTACTTGTGGCGTTTGTGTTTGGCAACACAGCTAAGACAGTATTTGAAGCTATTATATTTGTTTTCGTGATGCATCCGTTCGATGTCGGGGATCGTTGTGTCATCGATGGTGTTCAGATGATTGTAGAAGAGATGAATATATTGACTACAATATTTTTGCGATACGACAATGAAAAGATATTCTATCCGAATTCAGTTCTTGCAACCAAGCCAATCAGTAACTTCTACCGGAGTCCAGAAATGAGTGATTCAGTCGAATTTTCGGTTGATGTTTCGACTTCAATACAAAGCATTGGAGCTTTAAAAGCTAGAATAAAAGAATACTTGGAGAGTAGGCCTCAACATTGGCGTCCAAACCACAGTGTATTGGTTAAGGATATTGAGAATGTGAACAAGATGAAGATGGTTCTTTATGTTACTCACACGATAAACTTTCAGAATTCCGTGGACAGGAATAACAGAAGATCTGAATTAGTTCTCGAGTTAAAGAGAATTTTTGAAGATCTTGATATCAAATATAATTTGCTGCCACAAGAAGTTCGTCTCAATCATGTAAGATCACAAGACCATAAAGCACAGACAGTTTGA 2244 0.381 MMEQQNTVKNNKTTKNEVVLRISNNEEIRDFERTHVAETSSHSKGSHAEEELTELENLRSSNDQVSTTTFLGRSEFSKPKARMVEPPFPKDANFVADKTQIKSSSSPNKKILPRDAPDGIGTVITPRTPLIGTPKKGEEEEDDDEEEEVYKTAEIEVSKRSGKKMKLMNWIELFAFVLILGFLIASLMVHKLQDKKIWSLELWKWCVLTLVIISGRLVTSWFMNVLVFLIERNFLFKKKVLYFVYGVRKSVQAFIWLSLVLLAWSLVFHHGVKRTRKVTRILGYITKALGSFVISAAIWLVKTLLIKLLSSHFQSTRFFDRVQESIFHQYILRTLSGPPLMEMAEMVGKSSSRGRISFKTLVRDSEKKGKKEQAQVIDVEKLKKMKQKKVSAWTMKGLVDVIRSSGLSTISYTPESIYEEESDPKDSEITSEWEAKAAAYRIFRNVAKAGSKYIEKEDLLRFMKIEEVENLLPLFEGAVGTGRIKRKSLKNWLVKVYLERQSLVHSLNDAKTAVDELNNIASAIVLVLAVIVLLLVMGFLTTQVLVFISSQLLLVAFVFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFSVDVSTSIQSIGALKARIKEYLESRPQHWRPNHSVLVKDIENVNKMKMVLYVTHTINFQNSVDRNNRRSELVLELKRIFEDLDIKYNLLPQEVRLNHVRSQDHKAQTV 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi955g00010 747 MobiDBLite consensus disorder prediction 1 21 - -
Vivi955g00010 747 Gene3D - 578 627 IPR023408 -
Vivi955g00010 747 MobiDBLite consensus disorder prediction 123 146 - -
Vivi955g00010 747 Pfam Mechanosensitive ion channel 518 724 IPR006685 GO:0016020|GO:0055085
Vivi955g00010 747 MobiDBLite consensus disorder prediction 1 91 - -
Vivi955g00010 747 MobiDBLite consensus disorder prediction 99 118 - -
Vivi955g00010 747 MobiDBLite consensus disorder prediction 58 74 - -
Vivi955g00010 747 MobiDBLite consensus disorder prediction 22 57 - -
Vivi955g00010 747 FunFam Predicted mechanosensitive ion channel 578 627 - -
Vivi955g00010 747 PIRSF Memb_At2g17000 2 746 IPR016688 -
Vivi955g00010 747 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 7 737 IPR016688 -
Vivi955g00010 747 SUPERFAMILY Sm-like ribonucleoproteins 568 627 IPR010920 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi955g00010 71 734 Mechanosensitive Ion Channel Family AT5G12080 52.976 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi955g00010 K22048 - gmx:100777332 1022.31