Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi955g00008 ATGTCGGTGAATCTCACCGCGAACGCCATTCCGGCGATAATCAGCGGCGACGTCAACGCGAAACCGCTCGTTCAAATTCTCGAGATTACATCAGTCGTAAGCAACAAAAACTCTCAGCAGCAGCGGTACCGCGTTCTCCTCTCCGACGCCGTTTCATCGCACCACGCTATGCTCGCTGCTCAACTCAACGACCTAGTCACCACCGGACGTATCAAGAATGGCTCCATCGTTCAGCTTCTCGAATACATTTGCACTATTTTCCAGAATCGCAAGATTATTATGGTCCTCAACATGGAATCCATAATACCTGATTGTGAGATCATTGGAAGTCCAAAGCCATTTGTGGATTCAGAATTACCAGTTCAGAAAGCATTGCATGATAACACTGTGGGAAGTTCGGTCAACAACAACAATAACAATTATAATAATAATAGGAATATTTTGGCTACTCAAAATACTGGTAGTACTAATGTGCAGAATTTCAGGCCAACAATTCAACCTTCATACAAACCTCCCCCGGTTTACAAAGGCCGCGGTGCTGTTATGAAAAACGAGGCGCCGGCGCGAACAATACCGATAGCTGCTTTAAATCCATATCAAGGTAGGTGGGCAATCAGGGCAAGAGTTACTGCTAAAGGGGATTTGCGCCGGTATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTTGATCTCCTTGATTCTGATGGTGGTGAGATCCGCGTAACATGCTTTAATGCTATTGTTGACCGCTTCTATGAAACAATCGAGGTTGGCAAAGTTTACTTGATATCCAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTATGCTGGATTTAAATTCCACAGTTGAGCTTTGCCCAGATGAGGACGGTTCGATACCTAAACAGCAATTCTCCTTCAGGCCTATCAGTGACATTGAGAATGTCGAAAGTAATGCTATCCTTGATGTTATTGGGGTTGTGACATCTGTGAATCCTTCAGTTCCCATCTTAAGGAAGAATGGAATGGAAACGCTGCGAAGGATTTTGAATCTGAAGGACAATTCTGGCAGAAGTGTTGAGCTAACACTTTGGGGTGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTAGATTCCGGTGTTTTCCCCATTTTGGCAGTAAAGGCTGGGAAGGTGAATGAATTCAGTGGAAAGTCTTTAGGCTCTATTTCCACTACTCAGCTTTTCATAAATCCAGATTTCCCTGAGGCTCAAAGCTTACGAGCCTGGTTTGATCAAGTCGGAAAAGATTCTGCTTCTCTGTCCATTTCTAAGGACATTACTCATGGAGGACTGAAGAATGAGATACGCAAAACTGTGTCTCAAATCAAAGACGAAGGTCTGGGGCGTTCAGACAAGCCGGACTGGATAACGATAAGGGCAGCCATAACATTCATGAAGACTGATACATTTTGTTACACAGCTTGCCCTTTGATGATTGGAGATAGACAGTGCAATAAGAAAGTGACAAGGTCAGGAGACACCAGATGGCAATGTGATAGATGCAACCAGGAATTCGAGGAATGCGATTATCGTTACCTTCTCCAAGCTCAAATTCAGGATCATACTGGATTAACTTGGGTAACAGCTTTCCAGGAAGCAGGGGAAGAGATTATGGGGTACCCAGCAAAAGAGCTGTATGCACTGAAGTATGAACAAGAGGACGAAGAAAGGTTTGGCGAGATAGTCAAGAGTAGACTCTTCAATCACTTTGTATTTAAGCTGAAAATCAAAGAGGAATTATATGGGGAAGAACAGAAGGTGAAGAGCACAGTAGTTAAGGCAGATAAGGTGAATTATTCTGCAGAGAGTAGGTACATGCTTGATTTGATTTCCAAGTTCTGTAGGAAGTAA 1911 0.4343 MSVNLTANAIPAIISGDVNAKPLVQILEITSVVSNKNSQQQRYRVLLSDAVSSHHAMLAAQLNDLVTTGRIKNGSIVQLLEYICTIFQNRKIIMVLNMESIIPDCEIIGSPKPFVDSELPVQKALHDNTVGSSVNNNNNNYNNNRNILATQNTGSTNVQNFRPTIQPSYKPPPVYKGRGAVMKNEAPARTIPIAALNPYQGRWAIRARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYETIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSIPKQQFSFRPISDIENVESNAILDVIGVVTSVNPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDSGVFPILAVKAGKVNEFSGKSLGSISTTQLFINPDFPEAQSLRAWFDQVGKDSASLSISKDITHGGLKNEIRKTVSQIKDEGLGRSDKPDWITIRAAITFMKTDTFCYTACPLMIGDRQCNKKVTRSGDTRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQEAGEEIMGYPAKELYALKYEQEDEERFGEIVKSRLFNHFVFKLKIKEELYGEEQKVKSTVVKADKVNYSAESRYMLDLISKFCRK 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi955g00008 636 FunFam Replication protein A subunit 441 633 - -
Vivi955g00008 636 Gene3D - 302 441 IPR012340 -
Vivi955g00008 636 Pfam Replication factor-A C terminal domain 475 625 IPR013955 -
Vivi955g00008 636 CDD RPA1_DBD_A 192 295 - -
Vivi955g00008 636 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Vivi955g00008 636 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi955g00008 636 Gene3D - 189 299 IPR012340 -
Vivi955g00008 636 NCBIfam replication factor-a protein 1 (rpa1) 4 632 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi955g00008 636 Gene3D - 442 634 IPR012340 -
Vivi955g00008 636 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vivi955g00008 636 FunFam Replication protein A subunit 302 440 - -
Vivi955g00008 636 FunFam Replication protein A subunit 4 115 - -
Vivi955g00008 636 CDD RPA1_DBD_C 459 632 IPR047192 -
Vivi955g00008 636 Pfam OB-fold nucleic acid binding domain 204 284 IPR004365 GO:0003676
Vivi955g00008 636 Gene3D - 3 115 IPR012340 -
Vivi955g00008 636 PANTHER REPLICATION FACTOR A 1, RFA1 203 610 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi955g00008 636 Pfam Replication protein A OB domain 313 417 IPR031657 -
Vivi955g00008 636 CDD RPA1_DBD_B 324 431 - -
Vivi955g00008 636 SUPERFAMILY Nucleic acid-binding proteins 456 633 IPR012340 -
Vivi955g00008 636 FunFam Replication protein A subunit 189 298 - -
Vivi955g00008 636 SUPERFAMILY Nucleic acid-binding proteins 190 302 IPR012340 -
Vivi955g00008 636 SUPERFAMILY Nucleic acid-binding proteins 307 434 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi955g00008 26 632 Core DNA Replication Machinery Family AT2G06510 68.489 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi955g00008 K07466 - gmx:100792409 1034.63