Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi952g00003 ATGACATTTTGTAGCATGTTTCTTTTCATTTTCATCCTTTCTATATTTGTTTCATCTAGTCATGGAACTGGAAGTGACAAAATTACTGCTTTGCCCACTCAACCCAAGGTGGGATTTAAACAATACGCGGGTTATGTAAATATTGATGTAAACAATGGAACAAAACTGTTCTATTACTTTGTAGAGGCAGAGAATCATCCTGCCTCTAAACCAGTAGTTCTTTGGCTTCATGGGGGGCCTGGTTGCTCTGCTATTGGAGAAGGTGCTTTCGGCCAACACGGCCCTTTCAAGACAACAATCAGGGGTCTTGTGAAAAACCCATTTAGCAGGAACCGAGAAGCGAATATGATCTACCTCGATTCTCCTACTGGTGTTGGCTTTTCCTATTCCACCAACACTTCTGATTATTTCTTTGTGGATGATGAAACTGCAGGACACTATGCACCCCAACTTGCAGAGCTCATTTTCAAAATCAAAGCCAACATAAACTTGAAGGGAATAGCGATAGGAAATCCTCTTTTGGATTTCGATGTCGACTACAATTCCTCCGTCGAGTTTTTAAAGACGCATGGACAAATTTCAAGGTCAACATATCACGACCTAAAAGAAGTTTGTAGCTATCCGAACATTAGAAGAGAATATATATTTAATAAATTTACCAAGAGTTGCCAAGATGTAAATACAAAATTGTCTTTGAATGTTCATGGATTCACAAACAGGTTTAACGTGATTGCAGACAAGTGTCCAGCGGCTCCTGAAAATCAGAAATACCTCAAGCAAATGGGTGAGAAGGCTTTTGTATGCATAAGAGATGCAACATTTGCCTACATGAACATGAAAAAGACGCAAAAAGCTTTACATGCCGTGCTTGTAGGAAGGAAAATTTGGTCAGCTTGTAGTATGACTCTCCTGTATAATCCCCAGAGTCAGTTGATTCCAACCATCTCTATTCTAGGGACCCTTGTAAAGGCTGGTATAAGGGTTCTAGCATTTAGTGGTGATCAAGATTCTTGGATTCCATTTATTGGGACAGAGTTGTTGATTGAGGAAATGGCCAAGGATTTTGGGGTGGAAATCACAAGGCCCCATGAAGCTTGGTTTCAAGGAGGGCAGGTGGCGGGATGGACCCAAGAATATGGGAACTTTTTGACATTTGCAACAATAAAAGGTGCAGGTCATTCAGCCGGGAAATTTCAGCCAGAACGGACACTTGTGATGTGGAAGGCATTTTTGGAAGGAAAACCACTTCCAAAGAGACATCCATATCATTATTAA 1275 0.4078 MTFCSMFLFIFILSIFVSSSHGTGSDKITALPTQPKVGFKQYAGYVNIDVNNGTKLFYYFVEAENHPASKPVVLWLHGGPGCSAIGEGAFGQHGPFKTTIRGLVKNPFSRNREANMIYLDSPTGVGFSYSTNTSDYFFVDDETAGHYAPQLAELIFKIKANINLKGIAIGNPLLDFDVDYNSSVEFLKTHGQISRSTYHDLKEVCSYPNIRREYIFNKFTKSCQDVNTKLSLNVHGFTNRFNVIADKCPAAPENQKYLKQMGEKAFVCIRDATFAYMNMKKTQKALHAVLVGRKIWSACSMTLLYNPQSQLIPTISILGTLVKAGIRVLAFSGDQDSWIPFIGTELLIEEMAKDFGVEITRPHEAWFQGGQVAGWTQEYGNFLTFATIKGAGHSAGKFQPERTLVMWKAFLEGKPLPKRHPYHY 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi952g00003 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 118 IPR001563 GO:0004185|GO:0006508
Vivi952g00003 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 129 IPR001563 GO:0004185|GO:0006508
Vivi952g00003 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 383 396 IPR001563 GO:0004185|GO:0006508
Vivi952g00003 424 Gene3D alpha/beta hydrolase 141 259 IPR029058 -
Vivi952g00003 424 Gene3D alpha/beta hydrolase 23 140 IPR029058 -
Vivi952g00003 424 SUPERFAMILY alpha/beta-Hydrolases 32 417 IPR029058 -
Vivi952g00003 424 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 134 400 IPR001563 GO:0004185|GO:0006508
Vivi952g00003 424 Gene3D - 268 304 - -
Vivi952g00003 424 Pfam Serine carboxypeptidase 35 143 IPR001563 GO:0004185|GO:0006508
Vivi952g00003 424 Pfam Serine carboxypeptidase 144 412 IPR001563 GO:0004185|GO:0006508
Vivi952g00003 424 Gene3D - 315 413 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi952g00003 276 416 Calmodulin-binding Proteins AT2G22960 30.496 1.28e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi952g00003 K16297 - gmx:100805028 430.254