LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi94g00023	ATGGCAGGTAGAATGGATTTCTTCAACAATTCACAAGATCCATTCAATGGTGAGTTAATGGAAGTACTTGAACCTTTTATGAAGAGTTCTTCCACTACTCCCTCTTCCTCTTTATCTACTTCTACACCCCCTTATCTAAATTCACACCTCCCTTCAACTTCATCCCAATTTTACTCTTCTACCCCTACCTATTTCCAACCCTCTTTTTCTTCACCTTCTTTTCCTCCTCCACAGCCCAATTTCTACACAGAAAACGGTTACAGTTCATCCATGATGAATTACCAATTTCCATCAGGAAATTCATCAACCAGCCAAAATTTCATTGGCTTTGAACAACAACCACAACCGAATTCTGCACTTGGGCTAAACAACTTAACTCCATCACAAATCAATCAGATCCAACACCAGATCCAGTTTCAGCCTCAACAAATGAATCAAAATTTAAGCTTTCTTGGGCCTAAGCCCGTTCCAATGAAACAGCCCGGTGCACCTCCAAAGCCGACGAAGCTTTACAGAGGTGTAAGGCAGAGACATTGGGGAAAATGGGTGGCTGAGATAAGATTGCCTAAAAACAGAACAAGGCTCTGGCTTGGAACTTTTGATACTGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTACAGACTAAGAGGTGATTTCGCTAGGCTTAATTTCCCAAACATGAAGGACCAGCAAGGTCTGTTTGGGGAGTTCAAGTCTCTGCATTCGTCTATCGATGCTAAACTCGATGCTATTTGTGAGAGTTTAGGCAATGATGAAGCGAAGAAATCTGGGAAAGTGGAGAAAAATGTGAAAGGTTCTAAGAAAGGTTTGAAGAAAGAGGTTCAACCGATTGTTGTTGCTGAAAATAATGATGGTGATAACAAAAAAGTTGTGGTTGAAAGCTCGAGTGAAGGGTCGGATGATTCTTCACCACTTTCTGATCTTACTTTTGGTGATTTTGGGGAGCCTCAGTGGGAGAATTGTTGTGAGCAGTTTAATCTGCAGAAGTTTCCTTCTTATGAGATTGATTGGGATTCTCTTTAG	1050	0.4124	MAGRMDFFNNSQDPFNGELMEVLEPFMKSSSTTPSSSLSTSTPPYLNSHLPSTSSQFYSSTPTYFQPSFSSPSFPPPQPNFYTENGYSSSMMNYQFPSGNSSTSQNFIGFEQQPQPNSALGLNNLTPSQINQIQHQIQFQPQQMNQNLSFLGPKPVPMKQPGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNMKDQQGLFGEFKSLHSSIDAKLDAICESLGNDEAKKSGKVEKNVKGSKKGLKKEVQPIVVAENNDGDNKKVVVESSSEGSDDSSPLSDLTFGDFGEPQWENCCEQFNLQKFPSYEIDWDSL	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi94g00023	349	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	10	349	-	-
	Vivi94g00023	349	SMART	rav1_2	170	233	IPR001471	GO:0003700\|GO:0006355
	Vivi94g00023	349	SUPERFAMILY	DNA-binding domain	170	227	IPR016177	GO:0003677
	Vivi94g00023	349	MobiDBLite	consensus disorder prediction	293	321	-	-
	Vivi94g00023	349	CDD	AP2	169	228	IPR001471	GO:0003700\|GO:0006355
	Vivi94g00023	349	Pfam	AP2 domain	171	219	IPR001471	GO:0003700\|GO:0006355
	Vivi94g00023	349	ProSiteProfiles	AP2/ERF domain profile.	170	227	IPR001471	GO:0003700\|GO:0006355
	Vivi94g00023	349	FunFam	Ethylene-responsive transcription factor 2	169	228	-	-
	Vivi94g00023	349	PRINTS	Ethylene responsive element binding protein signature	171	182	IPR001471	GO:0003700\|GO:0006355
	Vivi94g00023	349	PRINTS	Ethylene responsive element binding protein signature	193	209	IPR001471	GO:0003700\|GO:0006355
	Vivi94g00023	349	Gene3D	AP2/ERF domain	170	229	IPR036955	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi94g00023	1	349	AP2-EREBP Transcription Factor Family	AT1G78080	45.767	5.37e-81	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi94g00023		AP2	7.9e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi94g00023	K09286		-	gmx:732559	306.605