Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi939g00009 ATGTTTTCGGAAACTCCTTTTGAAGACGACTATGCCCTTATCGGCAAGAACATGATAGGTCCTTTCATCGTTTTAGTTATATTGTTTTTCATCATGCTTCGCACTTATTTCTACCACCGTCATCTTCGCAATCAAAGTTTGTCCTCTTCAAGTTCAAACTCTCTCACCACTCCCACCACTTTCACAGAAGAACGTCTTGACCCTTCCGTTCTCAAATTCCTTCCCATCTTCACTTACTCTTCCTCCGCCGTCTCCTGTACTCTCCATGACTGTGCTATATGTTTGTCGGAGTATACAGATGGCGATGAATGTCGTAAACTTCCAAACTGTGACCATGTTTTTCATTCTCAATGCATTGACAGATGGTTTACTTCCCAGTCTAGTTGTCCGCTTTGTCGAGCTCTGGTCCAACCGGGGACGGTTGAGTCTCATATTGAACTGGGGTCTGCTTCGGATTCAGAAGAATCGGGTGAAGGTAGTTCGAATTTTCCTGAACCGATTGAGTGTCCAAGAAGACCGTTTAGAGTAATTGTTGAGTTGCCATCAGAGGTTTTTCAGATGAGATTTCATACCCAAGGATCAGAAGTTTTTCGGATGGAATCTCATACTCGAGAATAA 618 0.432 MFSETPFEDDYALIGKNMIGPFIVLVILFFIMLRTYFYHRHLRNQSLSSSSSNSLTTPTTFTEERLDPSVLKFLPIFTYSSSAVSCTLHDCAICLSEYTDGDECRKLPNCDHVFHSQCIDRWFTSQSSCPLCRALVQPGTVESHIELGSASDSEESGEGSSNFPEPIECPRRPFRVIVELPSEVFQMRFHTQGSEVFRMESHTRE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi939g00009 205 CDD RING-H2_EL5-like 90 133 - -
Vivi939g00009 205 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Vivi939g00009 205 SMART ring_2 91 132 IPR001841 -
Vivi939g00009 205 SUPERFAMILY RING/U-box 90 138 - -
Vivi939g00009 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 189 - -
Vivi939g00009 205 MobiDBLite consensus disorder prediction 147 167 - -
Vivi939g00009 205 Pfam Ring finger domain 90 133 IPR001841 -
Vivi939g00009 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 138 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi939g00009 39 196 Rapid Response to Elicitors AT4G15975 33.163 1.89e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi939g00009 - - vvo:131615155 381.333