Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi939g00008 ATGTTTTCGGAATCCGTCTTTGAAACAGATTATACCCTTAGCAAGGACCTGATAGGTACTTCCATCCTTACATTTATACTCTTTCTCATCATCCTTCGCACTTACTTTTACCTCCGCCACCATCGCAATCAACGTTTGCTCTCTGCAAGTTCAAACTCTCTTACGACTCCCACTTTCACTGAAGAACGTCTTGATCCTACCGTTCTCAAATCCCTTCCCATCTTTACCTACTCTTCTTCCGCCGTCCGCGGTACTTTTCATGAGTGTGCTATCTGTTTGTCGGAGTATACCGACGACGATGAATGTCGTATGCTTCCAAACTGTAGCCATGTTTTTCATTCTCAATGTATTGACGGGTGGTTTACTTCTCACTCTAATTGTCCTTTATGTAGAGCTCCGGTCCAACCGGTGACTGTTGAGTCTCAGGTTGAACCGGGGTTTGTTTCGGGTTCAGAAGGATCGGGTGAGGGTAGTTCGAATTTTCCAGAACCGATTGGGTGTCCGAGAAGGCCGTTTAGAGTAATTGTTGAGTTTCCAACAGAGGTTTTTCGGATGGAATCTCATACCCGAGGATAA 576 0.4514 MFSESVFETDYTLSKDLIGTSILTFILFLIILRTYFYLRHHRNQRLLSASSNSLTTPTFTEERLDPTVLKSLPIFTYSSSAVRGTFHECAICLSEYTDDDECRMLPNCSHVFHSQCIDGWFTSHSNCPLCRAPVQPVTVESQVEPGFVSGSEGSGEGSSNFPEPIGCPRRPFRVIVEFPTEVFRMESHTRG 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi939g00008 191 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vivi939g00008 191 CDD RING-H2_EL5-like 88 131 - -
Vivi939g00008 191 FunFam E3 ubiquitin-protein ligase ATL6 52 137 - -
Vivi939g00008 191 SMART ring_2 89 130 IPR001841 -
Vivi939g00008 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 140 IPR013083 -
Vivi939g00008 191 SUPERFAMILY RING/U-box 68 137 - -
Vivi939g00008 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 141 - -
Vivi939g00008 191 Pfam Ring finger domain 88 131 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi939g00008 29 136 Rapid Response to Elicitors AT4G15975 45.872 5.68e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi939g00008 - - vvo:131615155 267.314