Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi939g00006 ATGATAGGTCCTCTCATCCTTTTGTTTATATTCTTTCTCATTATTTTTCGCACTTATTTATACCTCTGTCACCTTCGCAATCAACGTTTGTCTTCTTTAACTAAAGAACGTCTTGACCCTACCATTCTCAAATCATTTCCAATCTTCACTTACTCTTCCTCCGCCGTAAGCCATACTCTCCACGACTGCGCTATTTGTTTGTCGGAGTATACAGACGACGATGAATGTCTTATGCTCCCAAACTGTAGTCATGTTTTTCATTCTCAATGTATTGACGAGTGGTTTACTTCTCAGTCTAATTGTCCTCTCTGCCGAGCTCCGATCCAACCGGTGAAAGTTGAGCCTCATGTTGAACCGGGGTCTGCTTCGGGTTCAAAAGAACCGGGTGAAGGTAGTTCGAATTTTCCTGAACCGATTGGGTGTCCAAGAAGACCGTTTAGAGTAATTGTCGAGTTGCCATCAGAGGTTTTTCGGATGGAATCTCATACCCGAGGATAA 498 0.4297 MIGPLILLFIFFLIIFRTYLYLCHLRNQRLSSLTKERLDPTILKSFPIFTYSSSAVSHTLHDCAICLSEYTDDDECLMLPNCSHVFHSQCIDEWFTSQSNCPLCRAPIQPVKVEPHVEPGSASGSKEPGEGSSNFPEPIGCPRRPFRVIVELPSEVFRMESHTRG 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi939g00006 165 CDD RING-H2_EL5-like 62 105 - -
Vivi939g00006 165 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 110 IPR044675 -
Vivi939g00006 165 SMART FANCL_C_2 59 113 - -
Vivi939g00006 165 Pfam Ring finger domain 62 105 IPR001841 -
Vivi939g00006 165 SUPERFAMILY RING/U-box 43 111 - -
Vivi939g00006 165 ProSiteProfiles Zinc finger RING-type profile. 63 105 IPR001841 -
Vivi939g00006 165 FunFam E3 ubiquitin-protein ligase ATL6 26 111 - -
Vivi939g00006 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 114 IPR013083 -
Vivi939g00006 165 MobiDBLite consensus disorder prediction 115 141 - -
Vivi939g00006 165 SMART ring_2 63 104 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi939g00006 31 161 Rapid Response to Elicitors AT3G16720 36.025 2.36e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi939g00006 - - vvo:131615157 301.597