Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi939g00003 ATGGGTATCGATTTGAAGGCAGGGGGTAAGTCCAAGAAGACAAAACGAACCGCACCAAAATCCGATGATATCTACCTCAAGCTTCTCGTCAGGCTTTACCGTTTCCTTGATCGGAGGACTTCCAGTAATTTCAATAAGGTTATCCTTAGGCGTCTTTTCATGAGCAAAGTTAATAGGCCACCGCTATCTCTCTCTAGGTTGGTTCGCTTCATGAAGGGAAAGGAGGGTAGGATTGCTGTAGTTGTGGGTGCTGTGACAGATGATATTCGTGTTCACGAAGTGCCTGCAATAAAGGTAACTGCTTTAAGGTTCACGGAAACTGCTAGAGCTAGAATTGTGAAGGCTGGTGGGGAGTGCCTTACCTTTGATGAACTTGCTGTTAGAGAACCTTTAGGCAAGAATGTGTTTCTTCTTAGAGGCCCCAAAAATGCTCGTGAGGCTGTTAAGCACTTTGGAAGAGCTCCTGGTGTGCCTCACAGTCATACCAAGCCCTATATCCGTTCTAAAGGACGCAAGTTTGAGAAGGCCAGAGGAAAGAGGAAGAGCAGAGGCTTCAGAGTTTAA 564 0.461 MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVRLYRFLDRRTSSNFNKVILRRLFMSKVNRPPLSLSRLVRFMKGKEGRIAVVVGAVTDDIRVHEVPAIKVTALRFTETARARIVKAGGECLTFDELAVREPLGKNVFLLRGPKNAREAVKHFGRAPGVPHSHTKPYIRSKGRKFEKARGKRKSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi939g00003 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Vivi939g00003 187 MobiDBLite consensus disorder prediction 153 187 - -
Vivi939g00003 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vivi939g00003 187 FunFam 60S ribosomal protein L18 1 187 - -
Vivi939g00003 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Vivi939g00003 187 Gene3D - 1 187 - -
Vivi939g00003 187 MobiDBLite consensus disorder prediction 164 187 - -
Vivi939g00003 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi939g00003 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 73.656 9.99e-98 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi939g00003 K02883 - pvy:116110370 326.635