Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi936g00005 ATGGCGCCACCGAAAAAAAGGAATTTACATCAATGGAAGCATCCATTTGATTCTGATTATCCATTTGAAGCAGTATTGTCTGGATCATGGCAACCTGTGAAACTCATCGAAGTTTCATCAGGAAAAACAACATTACATTTCATGGATACTCGGCAGATTCAAACTCCTTTGACATCGTCATCTGATATTCGGATAGGATCAAGAAAAGCTGCTTCATCCGATTGCTCCAACTTTTTACGATCTGGAATCGACATATCTATTCTATTAGGCTTTTGCCATCATGATGATAATTCATATCAATTTAGTCCTATTCCAATGTGGATTGATGCTAGGATAAATTCCATACACAGACAACCTCACGACGAATCTGATAAATGTTCGTGTCAATTTTATGTAAACTTCTATGACGATCAAGGTTCACTTGGAACCGAGATGAAAACTCTTAGTAAAAAGGATAATGCGATTGGAATCGACCAAATCTTCATCCTCCAGAGGCTTCAACATAATACTTCTGAAGGCTTGTTAAAAGAAAACAACAATTGCGAAGTTAAGCCTTATAGGTGGGATTCATCGGAAGATTGCTCTTCGTTATCCCAAACTAGATTAATTCTCGGGAAATTTTTATCTGATCTTTCGTGGTTCGTTATGACGTCTTTTTTAAAGAAGGTTTCATTTAGTATAAGATCTTTTCAGAACAAGCTTGTATATCAAGTTATGGGAAATGATACCGATGTTACTAGTCCTTTTTTGATAGATGTTGTGAACTTCAACCTTAAAAACGGATCACTAGTACCTATTATTTCTCAATTTGACGCGTTTCATGATTATGATGGTGAAGAAGATGAAGCGTCGCCAATGCAAACTAATGAAATTGGAGGCTTACGACGCTCAAGACGTAGAAATGTACAGCCCGAACGGTACATTGGTTGTGCTGTTGAGAAGTTGGCAGTTGGTAACTTTAGAACCTGGCCATACAAGAGAGGAACTTATGTGAAAAGAAACGATAACTCTTCTTCAGATTCAGATTCAGATTCAGATTCAAATTCAGAATCAGAAGAGGATGATAGTGAAAGTGACGAAAAGGTTAATGAGGCGGAAAAAACCAATGAAGTAAAGTTAGGTGATGCCGAACAAAATGATCATGGAGATGAAATTTCTTTGAAATATGATCATTTGACTGATGACATCGTTGAAGCAAAGAATAATGGTGCTGACGTGTTGAATTCGGATCCCTGCAATGATCAGTCTGCAATATCATGTGTTAAAGAAGTCGATGATAATGCTACTTTGGGACGTTATTATAGTTATTGCAGAGAAAAAAACCTCAAGAGGAAGCAATTTGATCATGATTTGGATGATATCGATTTTGGGAACAAATGGGAAGGGATCTGTTTTAAAAACGGCGCTCAAACAAAGCGATTTCGTTGGACAAACATAAACCAGGTTCATGACGAACAGCGTCATAAAGGAAGTAGAATGTACGCCGATGCCTCCAAAGAAATGATCGATACATATATGAAGAATTTCGATAGTCTGCCAACCGAAGAAGAGAAAAATGTTAACGAGCCGTGGCAGGAAACAAGCAAGTTGGAGCCGAGGGAAGAAGAAAAAACATCGAAAAGCGATGACGAGGAGGAAGAGAGTCCTGAGAATTTGGAGGCCTTGTGGCAAGAAATGAATACAGCTTTGACATCTAGTTATCTTCTTATTGGGAATGAGGACTCAAATGCTGCTGAGGTTTCGGCTGATACCGAGAAAGAATCAAAGGAAACTTGTGAACATGATTTTAGATTGGAAGACGAAATTGGAATATACTGCACCCGATGTGGTTTTGTGAAAACCGCAATACGAGACATATCTGAACCCATTATGGAAAATCCAAAATGGCACAAAGAGGAGAAACAATGCAGTGGAGAAGACAAACCCGAGCCAAAAGTCGAAGAAGTTGATAATAAGGATCTGTTCTTGACTCGTGCTAATGATCTCGATGAGCCAATATCAACAGAAAATGAAAATGTTTGGGAATTGATTCCAGAACTCAAAGAACAGATGCATGCACACCAGAAAAAAGCTTTTGAGTTTCTTTGGCGAAACATTGCAGGATCAATGGAACCAGCTCTCATGAAAGAAAACTCCGAAACAAGTGGTGGCTGTGTTATATCTCATGCTCCTGGAGCAGGAAAAACCTTTCTCATCATTTCGTTTCTCGTAAGTTACTTGAAACTATTTCCAGGGAAAAGACCATTAGTCCTAGCTCCGAAAACCACACTCTACACATGGCGAAAAGAGTTCAAGAAATGGAAGATTCCTGTGCCGGTGTACCTTATTCACGCCCGTCAATCCTCGAGAGATTTAACGACACTAAAATCAACGATTCTTCCGGGAGTTCCAAAACCTACTAGTGGTGTCAAACATGTTTTGGATTGTATCAACAAGATACAGAAATGGAATTCACACCCTAGTGTTCTTGTCATGGGCTATACTTCGTTTTTTTCGCTAATGAGATCGGAAGAAACGAAATTCGAACACAGAAAATACATGGCTAAAGCATTGAGAGAAAACCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACGAAATCGAGGTTGAGGAAATGTTTAATGAAAGTTCCAACAGAATTGAGGATATTACTTTCAGGCACATTGTTTCAGAACAATTTCTGCGAATATTTCAATACGCTTTCTTTAGCTAGACCAAAATTCGTGCACGAAGTTCTACATGAGTTGGACTCTAAATACAGAAGGAATGGAGAAATTATGAAGAAAGCACCGCATTTACTTGAGGCGAGAGCGAGGAAATTCTTCTTGGATAACATTGAAAAGAAGATTAACTCGGATATTGACGAGGAAAAAATGTTCGGTCTAAACTTGCTGCGGAAAATGACAACCGGATTCATTGATGTTTATGACAGTGGGAATTCTTCTGATACACTTCCTGGTTTGCAAATCTATACATTGCTCATGAACACGAACGACGAACAACACGAGATTATACAGAAGCTTCAGAAGAAAATGGCTAAGTCCAGTAGTTACCTTCTCGAGGTTGAACTTCTGATAACACTCGGATCAATACATCCTTGGTTGATCAAAACAGCAGCAGCATGTGCAGCTAAGTTTTTCACCGACGAAGAACTGAAGAAGCTAGAAACAAGCAAATTCGATTTGAGAAAAGGCTCCAAAGTAAGATTTGTCCTGAGCCTAATCTCGCGCGTAGTGAAAAACGAAAAGGTTCTTATCTTTTGTCACAACCTCGCACCAATAAGGTTTTTAATCGAGTTATTCGAGAAATATTTCCAGTGGCAAAACGGTAAAGAGGTTCTGCTACTAACCGGGGAGCTAGACTTGTTTGAAAGAGGCAAAGTGATAGACAAATTCGAAGATCCTCGTGGAAGTTCGAAGGTACTTCTTGCTTCTATCAATGCTTGTGCTGAAGGTATAAGCTTAACAGCAGCTTCTAGGGTGATATTTTTGGATTCTGAATGGAATCCTTCGAAAACAAAGCAGGCTATCGCGCGTGCTTTTCGTCCGGGGCAGCAGAAAATGGTGTACGTTTATCAGTTATTGACAACCGGATCGATGGAGGAAGATAAGTTTAGAAGGACTATATGGAAAGAGTGGATTTCTTGCATGATTTTCAGTCAAGAGTTTGTTGAAAATCCTTCGAAATGGCAAACTGAAAAGATAGAAGATGATATACTGAGGGAAATGGTTGAAGAAGATAAGTCAAAAGCAATTCATATGATTATGAAAAATGAAAAGGCTTCAACAACCTAA 3804 0.3896 MAPPKKRNLHQWKHPFDSDYPFEAVLSGSWQPVKLIEVSSGKTTLHFMDTRQIQTPLTSSSDIRIGSRKAASSDCSNFLRSGIDISILLGFCHHDDNSYQFSPIPMWIDARINSIHRQPHDESDKCSCQFYVNFYDDQGSLGTEMKTLSKKDNAIGIDQIFILQRLQHNTSEGLLKENNNCEVKPYRWDSSEDCSSLSQTRLILGKFLSDLSWFVMTSFLKKVSFSIRSFQNKLVYQVMGNDTDVTSPFLIDVVNFNLKNGSLVPIISQFDAFHDYDGEEDEASPMQTNEIGGLRRSRRRNVQPERYIGCAVEKLAVGNFRTWPYKRGTYVKRNDNSSSDSDSDSDSNSESEEDDSESDEKVNEAEKTNEVKLGDAEQNDHGDEISLKYDHLTDDIVEAKNNGADVLNSDPCNDQSAISCVKEVDDNATLGRYYSYCREKNLKRKQFDHDLDDIDFGNKWEGICFKNGAQTKRFRWTNINQVHDEQRHKGSRMYADASKEMIDTYMKNFDSLPTEEEKNVNEPWQETSKLEPREEEKTSKSDDEEEESPENLEALWQEMNTALTSSYLLIGNEDSNAAEVSADTEKESKETCEHDFRLEDEIGIYCTRCGFVKTAIRDISEPIMENPKWHKEEKQCSGEDKPEPKVEEVDNKDLFLTRANDLDEPISTENENVWELIPELKEQMHAHQKKAFEFLWRNIAGSMEPALMKENSETSGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHARQSSRDLTTLKSTILPGVPKPTSGVKHVLDCINKIQKWNSHPSVLVMGYTSFFSLMRSEETKFEHRKYMAKALRENPGILILDEGHNPRSTKSRLRKCLMKVPTELRILLSGTLFQNNFCEYFNTLSLARPKFVHEVLHELDSKYRRNGEIMKKAPHLLEARARKFFLDNIEKKINSDIDEEKMFGLNLLRKMTTGFIDVYDSGNSSDTLPGLQIYTLLMNTNDEQHEIIQKLQKKMAKSSSYLLEVELLITLGSIHPWLIKTAAACAAKFFTDEELKKLETSKFDLRKGSKVRFVLSLISRVVKNEKVLIFCHNLAPIRFLIELFEKYFQWQNGKEVLLLTGELDLFERGKVIDKFEDPRGSSKVLLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKFRRTIWKEWISCMIFSQEFVENPSKWQTEKIEDDILREMVEEDKSKAIHMIMKNEKASTT 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi936g00005 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1251 IPR027417 -
Vivi936g00005 1267 SMART helicmild6 1102 1187 IPR001650 -
Vivi936g00005 1267 MobiDBLite consensus disorder prediction 345 360 - -
Vivi936g00005 1267 MobiDBLite consensus disorder prediction 278 297 - -
Vivi936g00005 1267 MobiDBLite consensus disorder prediction 331 384 - -
Vivi936g00005 1267 CDD SF2_C_SNF 1069 1198 - -
Vivi936g00005 1267 MobiDBLite consensus disorder prediction 512 539 - -
Vivi936g00005 1267 Gene3D - 656 946 IPR038718 -
Vivi936g00005 1267 SMART ultradead3 680 918 IPR014001 -
Vivi936g00005 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 923 IPR027417 -
Vivi936g00005 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1073 1234 IPR001650 -
Vivi936g00005 1267 Pfam Helicase conserved C-terminal domain 1070 1186 IPR001650 -
Vivi936g00005 1267 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 59 1266 IPR044567 GO:0080188
Vivi936g00005 1267 MobiDBLite consensus disorder prediction 512 550 - -
Vivi936g00005 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 709 910 IPR014001 -
Vivi936g00005 1267 Gene3D - 989 1267 IPR027417 -
Vivi936g00005 1267 MobiDBLite consensus disorder prediction 361 384 - -
Vivi936g00005 1267 Pfam SNF2-related domain 692 958 IPR000330 GO:0005524|GO:0140658
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi936g00005 1084 1205 RAD5 or RAD16-like Gene Family AT5G05130 35.772 3.64e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi936g00005 SNF2_N 1.7e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi936g00005 K10875 - gmx:100811703 1319.68