Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi934g00002 ATGTTGAACATAGCAAACATATCCATGGCTCGTGCAACCACTGCTTCCTCCCTTATCTACCACCACAAACTCTTCAACTTCTCCTCTACCCATTCACCCATTCCCCACACCCTCAACTTCCCACTCACAACAACAACCAGTTCCTCAAAACCCCTCATTCTAAATCCCCAGTTACTCAACCCTCCTTCTTTCAAACTCCACCCTCTTCACCCACCATCATTTTCCTTACATCAATTCGAATATACTGAAGAAGAAGAAAATGATCCTAAAACTGAAACTAAAACCTTACCGAATTCAGACCCAAAATCGTCGCAATCAAAGAGACTATTTGTTGGTAACTTGCCATTTTCATTATCTTCTTCCCAATTGGCTCAACTCTTTGCAGAAGCCGGAAACGTTGTGTCTGTAGAGATTGCGCATGATGACATTGGGGATAGAAGCAGAGGATTTGCGTTTGTTACAATGGGGAGCGTGGAGGATGCTGAAGAAGCAATTCGAATGTTTGAGGGCACTAATGTTGGAGGTAGAGTTATTAAGGTAAACTTCCCAGAAGTGCCTAGAGTAGGCAAAAGGGCAAAAATGGGCTCAAACTATAAAGGTTATGTAGACAGCCCTCACAAAATCTATGCCGGAAACCTCGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTAAGCAGAAAGGCTTACTGAGTGCCAAGGTTATCTATGAAAGGAACACCGGAAAATCTCGCGGATATGGGTTTGTTTCGTTCGAAACTGCTGAGGAAGTAAAAGCTGCTTTGATTGCTATGAACGGCGTGGAGGTTCAAGGACGGCCTTTACGAATGAAATTGGCTGTTGATGACAAGAAGCCTTTATCGCCTCCGGTAATTGATTAA 888 0.4369 MLNIANISMARATTASSLIYHHKLFNFSSTHSPIPHTLNFPLTTTTSSSKPLILNPQLLNPPSFKLHPLHPPSFSLHQFEYTEEEENDPKTETKTLPNSDPKSSQSKRLFVGNLPFSLSSSQLAQLFAEAGNVVSVEIAHDDIGDRSRGFAFVTMGSVEDAEEAIRMFEGTNVGGRVIKVNFPEVPRVGKRAKMGSNYKGYVDSPHKIYAGNLGWDMTSQDLREAFAKQKGLLSAKVIYERNTGKSRGYGFVSFETAEEVKAALIAMNGVEVQGRPLRMKLAVDDKKPLSPPVID 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi934g00002 295 Gene3D - 192 288 IPR012677 -
Vivi934g00002 295 PANTHER OS02G0815200 PROTEIN 78 285 - -
Vivi934g00002 295 SMART rrm1_1 207 280 IPR000504 GO:0003723
Vivi934g00002 295 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vivi934g00002 295 CDD RRM2_NsCP33_like 207 282 - -
Vivi934g00002 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Vivi934g00002 295 SUPERFAMILY RNA-binding domain, RBD 89 193 IPR035979 GO:0003676
Vivi934g00002 295 MobiDBLite consensus disorder prediction 81 95 - -
Vivi934g00002 295 MobiDBLite consensus disorder prediction 81 105 - -
Vivi934g00002 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Vivi934g00002 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 278 IPR000504 GO:0003723
Vivi934g00002 295 Gene3D - 77 191 IPR012677 -
Vivi934g00002 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vivi934g00002 295 SUPERFAMILY RNA-binding domain, RBD 202 287 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi934g00002 106 282 Eukaryotic Initiation Factors Gene Family AT3G16380 31.868 4.23e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi934g00002 - - psat:127093492 439.499