Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi932g00005 ATGATGAAGAGACAGAGAGAAAATGAAGTAAATAAAGAGAGCATGGATTTAGCAACAAGTCTAATGCTACTCTCTTCTTATCGTACCCATCAACACCAAAAGAACAAAACATATTTACAAGATCAGTTTGAGTGCAAAACATGCAACCGCAAATTCTCATCTTTTCAAGCACTCGGTGGTCATAGGGCAAGTCACAAGAAACTCAAACTTGTAGGAGATGAAACACACAAGGGGTATGATCATACAAATAAGCAACCGAAAATGCATAAGTGTTCAATTTGTGGACAAGAATTCAAAATGGGTCAAGCTTTGGGTGGACATATGAGAAGGCATAGAATTAATAATGAACAATTTTCTTCCTCTTCTTTGAATCATCAAGTGATAACAAAATCTTCTCCTGGTTTGAAAAGATCAAATAGTATAAGGGTTATGTTTTTGGAACTTGACTTGAATTTGACACCTTTAGAAAATGATTTGAAGATGTTGTTTGGAAATAAAGCACCACAAGTAAATATCTCTTTGTTTTGA 528 0.3447 MMKRQRENEVNKESMDLATSLMLLSSYRTHQHQKNKTYLQDQFECKTCNRKFSSFQALGGHRASHKKLKLVGDETHKGYDHTNKQPKMHKCSICGQEFKMGQALGGHMRRHRINNEQFSSSSLNHQVITKSSPGLKRSNSIRVMFLELDLNLTPLENDLKMLFGNKAPQVNISLF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi932g00005 175 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Vivi932g00005 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Vivi932g00005 175 Pfam C2H2-type zinc finger 89 112 - -
Vivi932g00005 175 Pfam C2H2-type zinc finger 43 67 - -
Vivi932g00005 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Vivi932g00005 175 SUPERFAMILY beta-beta-alpha zinc fingers 42 111 IPR036236 -
Vivi932g00005 175 Gene3D Classic Zinc Finger 41 111 - -
Vivi932g00005 175 PANTHER ZINC FINGER PROTEIN ZAT5 2 158 - -
Vivi932g00005 175 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Vivi932g00005 175 SMART c2h2final6 43 65 IPR013087 -
Vivi932g00005 175 SMART c2h2final6 89 111 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi932g00005 2 172 C2H2 Transcription Factor Family AT3G53600 48.045 2.70e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi932g00005 zf-C2H2_6 1.5e-10 CL0361