Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi928g00004 ATGGCTATTGCTGGTTTGCACAGTGTGTCGATGCTGGATTCTTCTTTATTGAGGGACTCGCAGTCTCAGGCGTCTAGGAGGAGGGGAGATGGAAGAAGGGGTAGCACTCGGTCGTCTTCACTTTTGCACATGTGGCGAGAGATTGAGGATGAACATGCAGTGAGTCAAGTTCAAGGTAGCAATGGGTTGATTGCGGATCTTTCGTTAGAAGATACACCTGATAGCCCAGAGATAGGACGGAGGCATGGTTTGGACGATGCTGTTTTTGGTGAGAATGAGTCGGAAACATGGTCACAGTCACAAAGTCAGAATGAATCACATGATGGTCATGAGGATTTAAACAATTCTAGCTGTGAAAATTCTTCTGTTTTTGGAGAAGTTGAAAGGGAAAGAGTGAGACGAATTTTCAGGGAATGGATGAATAGTGGATCTAGGGATTGTGGATCAACTATTTCCCGAAGAAGTAGCAGTCCAAGGAGAGAATGGCTTGGAGAAACTGAACAGGAAAGAGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAACGTTTCTTCTGGGGAAAATAGGGAACAACCATGTGCTGAAATTGGTACACAAATTGAACGTGTGCGTGATGGATTTGTGGTTAACAGTGGTGGTGGCCAAAGTGAACATATACTGAGGGGTATGCGTAAAATACGTGGCAGGCAGGTTATGCTAGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAGAGGGAAATTCAGGAGTTGCTGGACCATCAGGCTGTATCTCGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCTACTGATCATAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGCCTATTAAGGCGAAAGCAAACTGTATCAGGTCTTAGGGAAGGGTTCTTCTCTAGAATGGACAGTACAGGTTCCAGTCCTGCACCCAGCAGCCTATCTGACACCTCGTCAAACATTGATATTGATTTTAATACAAATGAGCAAGCTGGAGAAAGCAGTTCATGTATTGTCGTTGGAGATAATAGTACTGGGATATCTGGTGGACACTGTCTAGAAGGAACTACATGTGAGAGTTTTAATTGGCAAGAATCTATTACTGCCCATGCAGATGGAAATCAGTTGCAGTGCTTGCAAATTGAATCAGTAGATGGGCAGTCATCATCAGTCAGTGTTGTATGTGAAAGAAGAGATGACACTGGACAAAATGTTGATGTGGTGGCAATCAGAGATGACATTGGGCAAAATGTTGATGTGGTGGCTATCAGAGATACAGCTAATGAACTAATCCAACAAAGCTTACAAATCCATGATTCAGAGCATAGCAGTAATCAGGAATCCAGCGAGGTGCACATTGGGCAATCTGAGCTGAGTGATATAGGTATCGATGAAAACGATTCATCGAATCACAATGGTTATTCCGAGGGCAATGCTGTCGATAATGTTAATTATGGGTCCAGTGCTCTAGAAGGACCTCCGGAAGATATTGTTGAAACTGAAGGAAATGACTGGCATCAGAGTAACACAGAATGGAGAAATAACACTGATGAAAGTGGGGATGATAATCAGCTCAGCAATACCGCAAATGAGTGGCCTGAAAATATTTGGGCAAATGAGGATGGAGAAAATCCTCGTCTGCCAGAAGCTTCTGAAGTGTGGCAAGAGGATGGTGGCTTCCAAGAAGCGGTGGAAAATTGGTTGGGAGGACCTTCTAACAATGAAACTGCTCCAGGTGGTAGAGTTAATAATTTTTATTTTCCTGATGATGACAATGTATACAGTGTTGAACTCAGGGAGCTTCACAGTAGGAGACGCGTCTCTAATCTTCTCGGCAGTAGTTTCCGTGAGAGTCTTGACCAGTTGATACAATCATATGTTGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGAAGAAGCAACCCCTTCAGCTGCTTTAGTAGAACAGAACCTCGAGCATCAGAGGGGAGATCAGATTGTTGATCAAGAGACTACTATTAATAATTCACCTGACTTGCCCTCTTTGCATACACCGCCTACTCCACCTCTTTGGGATCAGCATCCTCATGATGATAACTGGCCACACAATGATGATTTGGAGATGATTAATGATTTGAGACTTGACATGGCTAGATTACATCAAAGAATGAATAGTATGCAGAAGATGTTGGAGACATGTATGGATATGCAGCTTGAATTGCAGCGTTCAATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCAGGTGATTCACCAGGAATACATGAGTGCGATTCACCAGTTGACAGTTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGGATTTGCGGCGAAGGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAGTGCCCAATGTGTCAAGCCCCTGTTTTGGAGGTGATACGAACTTATTCTATACTATAA 2532 0.434 MAIAGLHSVSMLDSSLLRDSQSQASRRRGDGRRGSTRSSSLLHMWREIEDEHAVSQVQGSNGLIADLSLEDTPDSPEIGRRHGLDDAVFGENESETWSQSQSQNESHDGHEDLNNSSCENSSVFGEVERERVRRIFREWMNSGSRDCGSTISRRSSSPRREWLGETEQERVRVIREWVQMSSQQRNVSSGENREQPCAEIGTQIERVRDGFVVNSGGGQSEHILRGMRKIRGRQVMLDMLKKAERERQREIQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSTDHNRSTSVAESELGLLRRKQTVSGLREGFFSRMDSTGSSPAPSSLSDTSSNIDIDFNTNEQAGESSSCIVVGDNSTGISGGHCLEGTTCESFNWQESITAHADGNQLQCLQIESVDGQSSSVSVVCERRDDTGQNVDVVAIRDDIGQNVDVVAIRDTANELIQQSLQIHDSEHSSNQESSEVHIGQSELSDIGIDENDSSNHNGYSEGNAVDNVNYGSSALEGPPEDIVETEGNDWHQSNTEWRNNTDESGDDNQLSNTANEWPENIWANEDGENPRLPEASEVWQEDGGFQEAVENWLGGPSNNETAPGGRVNNFYFPDDDNVYSVELRELHSRRRVSNLLGSSFRESLDQLIQSYVERQGHANMEWDMEEATPSAALVEQNLEHQRGDQIVDQETTINNSPDLPSLHTPPTPPLWDQHPHDDNWPHNDDLEMINDLRLDMARLHQRMNSMQKMLETCMDMQLELQRSIRQEVSAALNRSGDSPGIHECDSPVDSSKWECVRKGLCWICGEGNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVLEVIRTYSIL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi928g00004 843 CDD mRING-HC-C3HC5_NEU1 791 840 - -
Vivi928g00004 843 MobiDBLite consensus disorder prediction 476 500 - -
Vivi928g00004 843 Coils Coil 233 260 - -
Vivi928g00004 843 SUPERFAMILY RING/U-box 790 837 - -
Vivi928g00004 843 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 449 843 - -
Vivi928g00004 843 MobiDBLite consensus disorder prediction 316 335 - -
Vivi928g00004 843 MobiDBLite consensus disorder prediction 476 561 - -
Vivi928g00004 843 Coils Coil 719 739 - -
Vivi928g00004 843 MobiDBLite consensus disorder prediction 518 549 - -
Vivi928g00004 843 MobiDBLite consensus disorder prediction 15 41 - -
Vivi928g00004 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 841 IPR013083 -
Vivi928g00004 843 ProSiteProfiles Zinc finger RING-type profile. 791 830 IPR001841 -
Vivi928g00004 843 MobiDBLite consensus disorder prediction 91 124 - -
Vivi928g00004 843 MobiDBLite consensus disorder prediction 314 335 - -
Vivi928g00004 843 Pfam Zinc finger, C3HC4 type (RING finger) 788 835 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi928g00004 791 837 C3H Transcription Factor Family AT3G06140 42.553 2.45e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi928g00004 - - gmx:100801329 1062.75