Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi928g00001 ATGCTGGATTCTTCTTTATTGAGGGACTCGCAGTCTCAGGCGTCTAGGAGGAGGGGAGATGGAAGAAGGGGTAGCACTCGGTCGTCTTCACTTTTGCACATGTGGCGAGAGATTGAGGATGAACATGCAGTGAGTCAAGTTCAAGGTAGCAATGGGTTGATTGCGGATCTTTCGTTAGAAGATACACCTGATAGCCCAGAGATAGGACGGAGGCATGGTTTGGACGATGCTGTTTTTGGTGAGAATGAGTCGGAAACATGGTCACAGTCACAAAGTCAGAATGAATCACATGATGGTCATGAGGATTTAAACAATTCTAGCTGTGAAAATTCTTCTGTTTTTGGAGAAGTTGAAAGGGAAAGAGTGAGACGAATTTTCAGGGAATGGATGAATAGTGGATCTAGGGATTGTGGATCAACTATTTCCCGAAGAAGTAGCAGTCCAAGGAGAGAATGGCTTGGAGAAACTGAACAGGAAAGAGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAACGTTTCTTCTGGGGAAAATAGGGAACAACCATGTGCTGAAATTGGTACACAAATTGAACGTGTGCGTGATGGATTTGTGGTTAACAGTGGTGGTGGCCAAAGTGAACATATACTGAGGGGTATGCGTAAAATACGTGGCAGGCAGGTTATGCTAGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAGAGGGAAATTCAGGAGTTGCTGGACCATCAGGCTGTATCTCGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCTACTGATCATAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGCCTATTAAGGCGAAAGCAAACTGTATCAGGTCTTAGGGAAGGGTTCTTCTCTAGAATGGACAGTACAGGTTCCAGTCCTGCACCCAGCAGCCTATCTGACACCTCGTCAAACATTGATATTGATTTTAATACAAATGAGCAAGCTGGAGAAAGCAGTTCATGTATTGTCGTTGGAGATAATAGTACTGGGATATCTGGTGGACACTGTCTAGAAGGAACTACATGTGAGAGTTTTAATTGGCAAGAATCTATTACTGCCCATGCAGATGGAAATCAGTTGCAGTGCTTGCAAATTGAATCAGTAGATGGGCAGTCATCATCAGTCAGTGTTGTATGTGAAAGAAGAGATGACACTGGACAAAATGTTGATGTGGTGGCAATCAGAGATGACATTGGGCAAAATGTTGATGTGGTGGCTATCAGAGATACAGCTAATGAACTAATCCAACAAAGCTTACAAATCCATGATTCAGAGCATAGCAGTAATCAGGAATCCAGCGAGGTGCACATTGGGCAATCTGAGCTGAGTGATATAGGTATCGATGAAAACGATTCATCGAATCACAATGGTTATTCCGAGGGCAATGCTGTCGATAATGTTAATTATGGGTCCAGTGCTCTAGAAGGACCTCCGGAAGATATTGTTGAAACTGAAGGAAATGACTGGCATCAGAGTAACACAGAATGGAGAAATAACACTGATGAAAGTGGGGATGATAATCAGCTCAGCAATACCGCAAATGAGTGGCCTGAAAATATTTGGGCAAATGAGGATGGAGAAAATCCTCGTCTGCCAGAAGCTTCTGAAGTGTGGCAAGAGGATGGTGGCTTCCAAGAAGCGGTGGAAAATTGGTTGGGAGGACCTTCTAACAATGAAACTGCTCCAGGTGGTAGAGTTAATAATTTTTATTTTCCTGATGATGACAATGTATACAGTGTTGAACTCAGGGAGCTTCACAGTAGGAGACGCGTCTCTAATCTTCTCGGCAGTAGTTTCCGTGAGAGTCTTGACCAGTTGATACAATCATATGTTGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGAAGAAGCAACCCCTTCAGCTGCTTTAGTAGAACAGAACCTCGAGCATCAGAGGGGAGATCAGATTGTTGATCAAGAGACTACTATTAATAATTCACCTGACTTGCCCTCTTTGCATACACCGCCTACTCCACCTCTTTGGGATCAGCATCCTCATGATGATAACTGGCCACACAATGATGATTTGGAGATGATTAATGATTTGAGACTTGACATGGCTAGATTACATCAAAGAATGAATAGTATGCAGAAGATGTTGGAGACATGTATGGATATGCAGCTTGAATTGCAGCGTTCAATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCAGGTGATTCACCAGGAATACATGAGTGCGATTCACCAGTTGACAGTTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGGATTTGCGGCGAAGGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAGTGCCCAATGTGTCAAGCCCCTGTTTTGGAGGTGATACGAACTTATTCTATACTATAA 2502 0.4333 MLDSSLLRDSQSQASRRRGDGRRGSTRSSSLLHMWREIEDEHAVSQVQGSNGLIADLSLEDTPDSPEIGRRHGLDDAVFGENESETWSQSQSQNESHDGHEDLNNSSCENSSVFGEVERERVRRIFREWMNSGSRDCGSTISRRSSSPRREWLGETEQERVRVIREWVQMSSQQRNVSSGENREQPCAEIGTQIERVRDGFVVNSGGGQSEHILRGMRKIRGRQVMLDMLKKAERERQREIQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSTDHNRSTSVAESELGLLRRKQTVSGLREGFFSRMDSTGSSPAPSSLSDTSSNIDIDFNTNEQAGESSSCIVVGDNSTGISGGHCLEGTTCESFNWQESITAHADGNQLQCLQIESVDGQSSSVSVVCERRDDTGQNVDVVAIRDDIGQNVDVVAIRDTANELIQQSLQIHDSEHSSNQESSEVHIGQSELSDIGIDENDSSNHNGYSEGNAVDNVNYGSSALEGPPEDIVETEGNDWHQSNTEWRNNTDESGDDNQLSNTANEWPENIWANEDGENPRLPEASEVWQEDGGFQEAVENWLGGPSNNETAPGGRVNNFYFPDDDNVYSVELRELHSRRRVSNLLGSSFRESLDQLIQSYVERQGHANMEWDMEEATPSAALVEQNLEHQRGDQIVDQETTINNSPDLPSLHTPPTPPLWDQHPHDDNWPHNDDLEMINDLRLDMARLHQRMNSMQKMLETCMDMQLELQRSIRQEVSAALNRSGDSPGIHECDSPVDSSKWECVRKGLCWICGEGNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVLEVIRTYSIL 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi928g00001 833 Coils Coil 709 729 - -
Vivi928g00001 833 SUPERFAMILY RING/U-box 780 827 - -
Vivi928g00001 833 MobiDBLite consensus disorder prediction 508 539 - -
Vivi928g00001 833 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 833 - -
Vivi928g00001 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 831 IPR013083 -
Vivi928g00001 833 MobiDBLite consensus disorder prediction 81 114 - -
Vivi928g00001 833 MobiDBLite consensus disorder prediction 304 325 - -
Vivi928g00001 833 CDD mRING-HC-C3HC5_NEU1 781 830 - -
Vivi928g00001 833 MobiDBLite consensus disorder prediction 466 490 - -
Vivi928g00001 833 Pfam Zinc finger, C3HC4 type (RING finger) 778 825 - -
Vivi928g00001 833 Coils Coil 223 250 - -
Vivi928g00001 833 MobiDBLite consensus disorder prediction 1 33 - -
Vivi928g00001 833 ProSiteProfiles Zinc finger RING-type profile. 781 820 IPR001841 -
Vivi928g00001 833 MobiDBLite consensus disorder prediction 306 325 - -
Vivi928g00001 833 MobiDBLite consensus disorder prediction 466 551 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi928g00001 781 827 C3H Transcription Factor Family AT3G06140 42.553 2.59e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi928g00001 - - gmx:100801329 1050.04