Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi923g00014 ATGGTACTATTGAAGTGTGACATGAACAATTTCATCATGCAAAACTTTAGTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGTTGGGACTATTGTGTTTACTGGAAATTAAGTGAAGATCAAAGGTTTCTCGAATGGTTGGGATGTTGTTGTGGAGGAAGTGAAAGCAATCAAAACGGCGGTAGAGAAGAACATATTTTCGCGATCTCTTCATGTAGGGATACAATGTTTTCGCATCCAAGAACAAATTCTTGTGATCTACTTTCACAACTTAACACTTCCATTACTACGGATTCGGGGATTCATGCACAAACTCTACTAACAAACCAACCTAGTTGGTTGAATTATCCTAACACCTTGGATCCAAACACTCTACAAGAAACAATTAATGGGACACATGTTTTGGTTCCTGTGCCTGGTGGACTAGTTGAGCTCTTTGTAACTAAACAAGTTGGTGAAGATCAACAGGTGATAGATTTCATCACATCTCAGTGTATGGTCATGGTGGATCAAGAAGGGATGATGAACAACTCAATGAGCAACATGCAATCAAATCAAGCTATAGTCGACGAAATCGACGGAGATAAAACAAGCAATCGTTTTCATGCATCAGAGACATTGAATCTTCCACATGACATGTCTGTAATGAACTTCATGCAACAGTTCAATTACAGTTACAATTACAATCAGCAACAAAACCGAATAAAAAACGACGAAACATTCTCTGAAGAATACCAAGGTTCATTCCTTCATGATCTCGAAAACAACAACAACAACAACAACAACAGCAGCAGCATTCTCAAATCTAACACAGAAGAGGAACATGATAACAAAAGCCTAATGACAGATAATAATCAGTATATGTTTGTGGATCCATTAGACTCGAAAAGAAAACACGAACAAGTTGTTGGTAGATCGGATTCTATGTCGGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAGTTCAGAAGAAGAAACGGAAAAGGAAACCAGTCAAAGAATCTCGTCGCCGAGAGAAAAAGAAGGAAGAAACTGAATGATAGGTTGTATAATCTTCGCTCGTTGGTTCCGAGAATCTCAAAGCTTGATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTTCAAGATGAACTTGAGGAAAATTCAGATACAGGAACCGAAAGTAACTGCATTGTTAATGGAAATAATAATCAATATATTGACGGCGTTCAAGCTCAACTAGATAATAATAATAATAACAGTAATGTTCCAAAAGAAGAACATGGTGGTTTTCATGTTGGAAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTAGGTACTGGTACTGACAAACAAACACAACAAATGGAGCCACAAGTGGAAGTGGCATTGATAGATGGGAATGAGTATTTTCTGAAGGTGTTCTGTGAGCATAGGCCTGGTGGATTTGTGAGATTGATGGAAGCATTCAACACTTTAGGCATGGATGTAATGCATGCCACAGTAACAAGCCATAAAGGTCTTGTGTCAAATGTTTTCAAAGTTGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGATGTAAGAGATTCATTGCTGGAGCTGACAAGGAACAGATCTACATGTTGGAGTGATGAGATGACAGCAACATCATCTGAGAATGGTGTCATCAGTAAGGACCAACATGATCAACAAACTGTTGCTGCATATCATTCACACCAGTTTCATAGTTAA 1755 0.3823 MVLLKCDMNNFIMQNFSERLRPLVGLNGWDYCVYWKLSEDQRFLEWLGCCCGGSESNQNGGREEHIFAISSCRDTMFSHPRTNSCDLLSQLNTSITTDSGIHAQTLLTNQPSWLNYPNTLDPNTLQETINGTHVLVPVPGGLVELFVTKQVGEDQQVIDFITSQCMVMVDQEGMMNNSMSNMQSNQAIVDEIDGDKTSNRFHASETLNLPHDMSVMNFMQQFNYSYNYNQQQNRIKNDETFSEEYQGSFLHDLENNNNNNNNSSSILKSNTEEEHDNKSLMTDNNQYMFVDPLDSKRKHEQVVGRSDSMSDCSDQNEEEDDGKFRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGNNNQYIDGVQAQLDNNNNNSNVPKEEHGGFHVGNGYVSKQKQEDVGTGTDKQTQQMEPQVEVALIDGNEYFLKVFCEHRPGGFVRLMEAFNTLGMDVMHATVTSHKGLVSNVFKVEKKESEIVEAEDVRDSLLELTRNRSTCWSDEMTATSSENGVISKDQHDQQTVAAYHSHQFHS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi923g00014 584 Coils Coil 370 397 - -
Vivi923g00014 584 SMART finulus 337 386 IPR011598 GO:0046983
Vivi923g00014 584 MobiDBLite consensus disorder prediction 251 268 - -
Vivi923g00014 584 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 394 IPR036638 GO:0046983
Vivi923g00014 584 Gene3D - 321 396 IPR036638 GO:0046983
Vivi923g00014 584 MobiDBLite consensus disorder prediction 296 337 - -
Vivi923g00014 584 Coils Coil 522 542 - -
Vivi923g00014 584 CDD bHLH_AtAMS_like 334 404 - -
Vivi923g00014 584 SUPERFAMILY ACT-like 475 542 IPR045865 -
Vivi923g00014 584 MobiDBLite consensus disorder prediction 251 284 - -
Vivi923g00014 584 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Vivi923g00014 584 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 18 163 IPR025610 -
Vivi923g00014 584 Pfam Helix-loop-helix DNA-binding domain 338 381 IPR011598 GO:0046983
Vivi923g00014 584 CDD ACT_UUR-ACR-like 479 542 - -
Vivi923g00014 584 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 150 544 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi923g00014 13 559 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.964 2.93e-148 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi923g00014 bHLH-MYC_N 5.3e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi923g00014 - - psat:127097943 1063.52