Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi923g00007 ATGCCTATAGGCAAAAGCAATGTTTCATTTGGCTACATACGGCATAATGAGAAAAAGGAAGATGCAGCCGAACCTGAGACCGACCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAAAGAGATGTTTATGAGTTCTTCTCAAGGGCAGGCAAGGTGCGAGACGTTCGCTTGATTTTGGACCGCAATTCAAGACGTTCTAAAGGTGTCGGGTATATTGAGTTCTACGATGTTATGTCTGTTCCCATGGCAATAGCGCTTTCAGGCCAACCAATTCTCGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCCAATGGACCTTCTGGAAATTTAGGTCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTTCATGGGGTCTTTGAAGCATTTGGTCAAGTTGAGCTAGTTCAGCTGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAGTCTGGAATGCAAGAATTTGGTGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCGTCCCGAGCATTACTCATGCAGAGGTTGGATCGCAGTGGCATTGCATCAAGTATCGTTGGTTTTCTGGGCAATCCCGTTGTCAACAATACAGGCCTTAATCTACAAGCAACGGGAAACATACCAGTGCTGACAAGTCCTTCTATTGATACAATTGGCGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGGAAAATGAGACGGAACCAGACTTCGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCGAAGTTCGGGAACTTAAAACATATATACGTTGATAAGAAGAGTACTGGGTTTGTCTACTTACGATTTGAAGATACCCAATCTGCTATAGGCGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAGGATAGATTCCCAGACAGCAAATAA 1179 0.4377 MPIGKSNVSFGYIRHNEKKEDAAEPETDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLILDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPILGQPVMVKPSEAEKNLVQSTASVANGPSGNLGPYSGGARRLYVGNLHSSITEADLHGVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQRLDRSGIASSIVGFLGNPVVNNTGLNLQATGNIPVLTSPSIDTIGVPSECLLLKNMFDPENETEPDFDLDVKEDVEAECSKFGNLKHIYVDKKSTGFVYLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDRFPDSK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi923g00007 392 FunFam RNA-binding protein 39 isoform X1 27 119 - -
Vivi923g00007 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Vivi923g00007 392 Gene3D - 6 119 IPR012677 -
Vivi923g00007 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 381 IPR000504 GO:0003723
Vivi923g00007 392 FunFam Splicing factor, CC1-like protein 293 392 - -
Vivi923g00007 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 215 IPR000504 GO:0003723
Vivi923g00007 392 Gene3D - 293 392 IPR012677 -
Vivi923g00007 392 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 14 391 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi923g00007 392 MobiDBLite consensus disorder prediction 1 31 - -
Vivi923g00007 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Vivi923g00007 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 103 IPR000504 GO:0003723
Vivi923g00007 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 374 IPR000504 GO:0003723
Vivi923g00007 392 CDD RRM1_RBM39_like 35 107 - -
Vivi923g00007 392 NCBIfam splicing factor, CC1-like family 15 390 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi923g00007 392 CDD RRM3_RBM39_like 297 379 - -
Vivi923g00007 392 SUPERFAMILY RNA-binding domain, RBD 28 135 IPR035979 GO:0003676
Vivi923g00007 392 SMART rrm1_1 35 107 IPR000504 GO:0003723
Vivi923g00007 392 SMART rrm1_1 299 377 IPR000504 GO:0003723
Vivi923g00007 392 SMART rrm1_1 139 211 IPR000504 GO:0003723
Vivi923g00007 392 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 230 316 IPR029123 -
Vivi923g00007 392 MobiDBLite consensus disorder prediction 12 31 - -
Vivi923g00007 392 SUPERFAMILY RNA-binding domain, RBD 138 385 IPR035979 GO:0003676
Vivi923g00007 392 Gene3D - 132 241 IPR012677 -
Vivi923g00007 392 FunFam CC1-like, splicing factor 133 241 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi923g00007 35 201 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 1.86e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi923g00007 K13091 - gmx:100789839 660.603