Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi923g00004 ATGATGGAATTTGATGAGTATGAATATCTAGAGAAAACAGTTGATAATTCTGAGCTTAAGAACAAGAATGGGGAAAAGACTGTGAAATTGGATGATAGTGTTCGTAGTAGAGGCTCGAACTCGAAGCATAAGGATAATGAGAAGCATGATGATAATGATGATGATGTTGATGTTGATAATTGGTTTATGCATTCGAAATCCGGAGATGGTTCTCGTGGTTATGACAGGGAGAAAGAAAGAGGCTTGTCTCGGCGTCGTTCTAGACCTAGAGATGGAGATAAGGAGAACGATCAGCGTAGAGGCTCTCAGGGTAATGGGGATAGGAAGAGAGATAGGGAGAGAGAGAGTGAAGGAAAGTATAGAAGGGAGAGAGACAGATATCAGGAGGTTGAAAGAGAGAGAAGGAATAATCGAGGGAGTGAGGGCGAAAGAGAGAAAGAACGCTTTCAACGAAGCAAAAGTATATCTGAAAGGAATCGAGGTGATATGGATGGCAGAACCCGAGAGACAAGTCGTGATAGAGGAATGGCAAGGGACACAAAGGATTACAGAGACAGAGGAATGGCAAGGGACACAAAGGAACCGGATAGAGAAAAGTTGGAAAACAGACGGCATAATGAGAAAAAGGAAGATGCAGCCGAACCTGAGACCGACCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAAAGAGATGTTTATGAGTTCTTCTCAAGGGCAGGCAAGGTGCGAGACGTTCGCTTGATTTTGGACCGCAATTCAAGACGTTCTAAAGGTGTCGGGTATATTGAGTTCTACGATGTTATGTCTGTTCCCATGGCAATAGCGCTTTCAGGCCAACCAATTCTCGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCCAATGGACCTTCTGGAAATTTAGGTCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTTCATGGGGTCTTTGAAGCATTTGGTCAAGTTGAGCTAGTTCAGCTGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAGTCTGGAATGCAAGAATTTGGTGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCGTCCCGAGCATTACTCATGCAGAGGTTGGATCGCAGTGGCATTGCATCAAGTATCGTTGGTTTTCTGGGCAATCCCGTTGTCAACAATACAGGCCTTAATCTACAAGCAACGGGAAACATACCAGTGCTGACAAGTCCTTCTATTGATACAATTGGCGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGGAAAATGAGACGGAACCAGACTTCGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCGAAGTTCGGGAACTTAAAACATATATACGTTGATAAGAAGAGTACTGGGTTTGTCTACTTACGATTTGAAGATACCCAATCTGCTATAGGCGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAGGATAGATTCCCAGACAGCAAATAA 1749 0.4362 MMEFDEYEYLEKTVDNSELKNKNGEKTVKLDDSVRSRGSNSKHKDNEKHDDNDDDVDVDNWFMHSKSGDGSRGYDREKERGLSRRRSRPRDGDKENDQRRGSQGNGDRKRDRERESEGKYRRERDRYQEVERERRNNRGSEGEREKERFQRSKSISERNRGDMDGRTRETSRDRGMARDTKDYRDRGMARDTKEPDREKLENRRHNEKKEDAAEPETDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLILDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPILGQPVMVKPSEAEKNLVQSTASVANGPSGNLGPYSGGARRLYVGNLHSSITEADLHGVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQRLDRSGIASSIVGFLGNPVVNNTGLNLQATGNIPVLTSPSIDTIGVPSECLLLKNMFDPENETEPDFDLDVKEDVEAECSKFGNLKHIYVDKKSTGFVYLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDRFPDSK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi923g00004 582 Gene3D - 483 582 IPR012677 -
Vivi923g00004 582 Coils Coil 113 133 - -
Vivi923g00004 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 405 IPR000504 GO:0003723
Vivi923g00004 582 FunFam CC1-like, splicing factor 323 431 - -
Vivi923g00004 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 488 571 IPR000504 GO:0003723
Vivi923g00004 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 301 IPR000504 GO:0003723
Vivi923g00004 582 FunFam Splicing factor, CC1-like protein 483 582 - -
Vivi923g00004 582 NCBIfam splicing factor, CC1-like family 107 580 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi923g00004 582 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 420 506 IPR029123 -
Vivi923g00004 582 FunFam RNA-binding protein 39 isoform X1 217 309 - -
Vivi923g00004 582 MobiDBLite consensus disorder prediction 13 51 - -
Vivi923g00004 582 CDD RRM1_RBM39_like 225 297 - -
Vivi923g00004 582 Gene3D - 326 430 IPR012677 -
Vivi923g00004 582 Gene3D - 189 325 IPR012677 -
Vivi923g00004 582 CDD RRM3_RBM39_like 487 569 - -
Vivi923g00004 582 SUPERFAMILY RNA-binding domain, RBD 218 326 IPR035979 GO:0003676
Vivi923g00004 582 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 581 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi923g00004 582 MobiDBLite consensus disorder prediction 69 222 - -
Vivi923g00004 582 SUPERFAMILY RNA-binding domain, RBD 328 575 IPR035979 GO:0003676
Vivi923g00004 582 SMART rrm1_1 225 297 IPR000504 GO:0003723
Vivi923g00004 582 SMART rrm1_1 329 401 IPR000504 GO:0003723
Vivi923g00004 582 SMART rrm1_1 489 567 IPR000504 GO:0003723
Vivi923g00004 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 293 IPR000504 GO:0003723
Vivi923g00004 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 511 564 IPR000504 GO:0003723
Vivi923g00004 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 399 IPR000504 GO:0003723
Vivi923g00004 582 MobiDBLite consensus disorder prediction 13 222 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi923g00004 225 391 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 2.02e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi923g00004 K13091 - gmx:100789839 772.696