Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi919g00023 | ATGCTACCACCCACCTTCATCATGATTCTCTTCATAATTCTCTTTGTCCTTTCAACACTTTCATTGCCACAATCTATAGCTGAAGCCACTGAAACTGAATCACAGGCTTTGTTAAAATGGAAACATAGCTTTGATAACCAAACCCAAACTCTCTTATCAACTTGGAAAAACACCACAAATCCATGCACATGGAGAGGAATCCAATGTCACAAATCTAATTCCATTTCTACCATAAACCTTGAAAATTTTGGACTCAAAGGTACACTTCACTCTCTCACTTTTTCCTCACTCCCTAATCTCACAACCCTAAACATCTATGGTAACCAATTTTATGGAAACATTCCTCCACAGATTGGAAACATGTCAAAAATAATCACATTGAATTTTTCTCAAAATTCTATTGATGGTTCCATTCCTCAAGAACTTTTCACTTTGAAAAGTTTACAAAATGTTGATTTCTCATTTTGTAAACTAAGTGGAGGAGTTTCTAGCTCTATAGGAAATTTAACCAATTTATTGTACCTAGATTTAGGTCACAATGATTTTTCTGGTGGATTTATTCCTCCTGAGATTGGAAAGTTGAACAAATTATGGTTTCTATCAATTCCAGAAAGTAAACTATTTGGTTCAATTCCACAAGAAATAGGGTTTTTGACAAACCTTACTTATATTGATTTGTCATTGAATTCTCTATCTGATGTTATTCCTGAAACCATAGGTAATCTGAGTAAATTGAATATACTTGTACTTTCTAATAACACCAAGTTGTCTGGTTCAATTCCACACTCCTTGTGGAACTTGTCTAGTTTGAATCTGATCTACTTTGATAAAATGAATCTTTCTGGTCCAATCTCTGATTCTATAGAAAATTTGGTTAATTTGGTTGAACTTGCACTTGATCTCAATCGCCTTTCCGGATCCATTCCTTCCACAATTGGGAACTTGAAAAATCTTGTTACTTTGTATTTGTCGACTAATCATCTCACTGGATCGATTCCTGAGTCGATAGGGAATTTGATCAATTTGCAAATTCTTAGTCTCCAAGAAAACAATCTGACTGGAACAATTCCAGAGTCGATTGGAAATTTGAAGTGGCTCACTACTTTTGAAGTAGCTACTAATAAACTTCATGGTAGAATTCCAGATGGACTTTATAACATTACCAATTGGTATTCCTTTGTTGTGTCTGGGAATGCTTTTGTTGGTCATTTGCCGTCTCGAATATGCTCTGGTGGAAAATTAAGGTACTTAAATGCGGATTCCAACCGTTTCACCGGTCCTGTGCCAACAAGTTTGAAAAACTGTTCTAGTATTGAAAGAATCACGCTCCAGGTGAACCAAATAGAAGGAGATATATCGCAAGATTTTGGTGTATATCCGAAATTGCGGTATCTTGATTTGAGTGACAATAAATTTCATGGACACATTTCAACAAACTGGAATAAGAGTCTTGATCTTGATACTTTCCAGGTATCTAACAATAATATTTCTGGTGTTATACCATTAGAACTTATTGGTTTAACCAAGCTGGGTAGGCTTCACCTTTCTTCAAATCAACTGACTGGGAAACTTCCAAAGGAATTAGGAAACAGGAAATCATTGGTTGAACTAAAGCTTAGTAACAATCAGTTGACAGATAAGATTCCAACAGAAATTGGATCGCTGCAAAGTCTCGAAGAGTTGGATCTCGGCGGAAATGAGTTGAGTGGCACAATACCGGAAGAAGTTGCAAGGTTGTCCAGCTTACGGACGTTGAATTTGAGTAGAAACAAACTTGAAGGAAGTATTCCATATCAGTTTGGCTCATCTCTTGGGTCTCTTGATCTAAGTGGCAATTTTTTGAGTGGAAAGATACCAACAGCTCTTGGAGGTTTAGTGCAGTTGTCAATGTTGAATCTCTCACATAATATGCTTTCAGGAACCATTCCTCAAAATTTTGAAAGGAGTTTGGATTTTGTTAACATATCAGACAACCGGTTAGAAGGCCCTCTTCCGAAGATTCCGGCTTTTCTTAGTGCTTCAATTGAATCATTCAAAAATAACAAAGACTTATGTGGAAATATCACAGGATTGGATCCTTGTCCAACAAGCCGTAGTCGAAAGAGCAAACATGTCCTTCGGTCAGTATTGATTGCTCTAGGAGCTCTAATATTAGTGGTGTGCAGTGTCGGAATTTCAATGTATATTTTGTTTCGAAGGAAATCAGTAAAGGAAGAAAGCCAAACTCCAGAAGAAACACAAAGAGGAATACTATTTTCAATTTGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGACGCTACTGAGAATTTTGATGACAAACATCTCATTGGAGTTGGGAGTCAAGGAAATGTTTACAAGGCAGAGTTGTCTTCAGATTTGGTTGTTGCTGTGAAGAAGCTTCATTCAGTAACAGATGAAACAAAGTCGTATTTCAGTTCAAAGTCTTTTACGAGTGAGATTGAAACCTTGACAGGAATCAAACACAGAAACATCATAAAGCTTCATGGATTTTGCTCACATTCTAAGTTCTCGTTTTTGGTTTACAAGTTCATGGAAGGTGGAAGCTTAGATCAAATGCTAAACAATGACACACAAGCCACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTCGCCAATGCTTTGTCCTATTTGCATCATGATTGCTTGCCTCCGATTATTCATCGTGACATATCGAGCAAGAATGTTCTTCTTAATCTTGACTATGAAGCTCATGTCTCCGACTTCGGGACGGCTAAATTTCTAAAGCCTGGTTTACCTAGTTATACCCATTTTGCAGGCACTTTTGGGTATGCTGCTCCAGAATTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATATAGCTTTGGAGTACTTGCATTGGAAATCATAATGGGAAAACATCCAGGAGATCTGATTTCATTATTTTTGTCACCATCTACAAGATCAATGGCTAACAATATGTTGTTGATAGATGTTTTAGATCAAAGACCTCACCAAGTTATTAAACCAATTGATGAAGAGGTGATCTTGATTGCAAGGTTGGCATTGGCTTGCTTGAGTCAAGAACCACGTTCGAGACCAACCATGGATCAAGTGTCAAAGATGCTTGCAATAGGAAAAACACCTCTGGGAAACCAACTTCACATGATTAGACTAGGACAACTACAATAA | 3198 | 0.3702 | MLPPTFIMILFIILFVLSTLSLPQSIAEATETESQALLKWKHSFDNQTQTLLSTWKNTTNPCTWRGIQCHKSNSISTINLENFGLKGTLHSLTFSSLPNLTTLNIYGNQFYGNIPPQIGNMSKIITLNFSQNSIDGSIPQELFTLKSLQNVDFSFCKLSGGVSSSIGNLTNLLYLDLGHNDFSGGFIPPEIGKLNKLWFLSIPESKLFGSIPQEIGFLTNLTYIDLSLNSLSDVIPETIGNLSKLNILVLSNNTKLSGSIPHSLWNLSSLNLIYFDKMNLSGPISDSIENLVNLVELALDLNRLSGSIPSTIGNLKNLVTLYLSTNHLTGSIPESIGNLINLQILSLQENNLTGTIPESIGNLKWLTTFEVATNKLHGRIPDGLYNITNWYSFVVSGNAFVGHLPSRICSGGKLRYLNADSNRFTGPVPTSLKNCSSIERITLQVNQIEGDISQDFGVYPKLRYLDLSDNKFHGHISTNWNKSLDLDTFQVSNNNISGVIPLELIGLTKLGRLHLSSNQLTGKLPKELGNRKSLVELKLSNNQLTDKIPTEIGSLQSLEELDLGGNELSGTIPEEVARLSSLRTLNLSRNKLEGSIPYQFGSSLGSLDLSGNFLSGKIPTALGGLVQLSMLNLSHNMLSGTIPQNFERSLDFVNISDNRLEGPLPKIPAFLSASIESFKNNKDLCGNITGLDPCPTSRSRKSKHVLRSVLIALGALILVVCSVGISMYILFRRKSVKEESQTPEETQRGILFSIWSHDGKMMFENIIDATENFDDKHLIGVGSQGNVYKAELSSDLVVAVKKLHSVTDETKSYFSSKSFTSEIETLTGIKHRNIIKLHGFCSHSKFSFLVYKFMEGGSLDQMLNNDTQATAFDWEKRVNVVKGVANALSYLHHDCLPPIIHRDISSKNVLLNLDYEAHVSDFGTAKFLKPGLPSYTHFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPGDLISLFLSPSTRSMANNMLLIDVLDQRPHQVIKPIDEEVILIARLALACLSQEPRSRPTMDQVSKMLAIGKTPLGNQLHMIRLGQLQ | 1065 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi919g00023 | 1065 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 189 | 284 | - | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 97 | 121 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 579 | 602 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 315 | 338 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 218 | 241 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 625 | 649 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 169 | 194 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 339 | 363 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 555 | 578 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 507 | 531 | IPR003591 | - | |
| Vivi919g00023 | 1065 | SMART | LRR_typ_2 | 291 | 314 | IPR003591 | - | |
| Vivi919g00023 | 1065 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 899 | 911 | IPR008266 | GO:0004672|GO:0006468 | |
| Vivi919g00023 | 1065 | FunFam | Nuclear pore complex protein NUP107 | 30 | 188 | - | - | |
| Vivi919g00023 | 1065 | FunFam | Probable leucine-rich repeat receptor-like protein kinase At5g63930 | 285 | 382 | - | - | |
| Vivi919g00023 | 1065 | Pfam | Leucine rich repeat | 219 | 274 | IPR001611 | GO:0005515 | |
| Vivi919g00023 | 1065 | Pfam | Leucine rich repeat | 533 | 592 | IPR001611 | GO:0005515 | |
| Vivi919g00023 | 1065 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 336 | 1048 | - | - | |
| Vivi919g00023 | 1065 | Gene3D | Phosphorylase Kinase; domain 1 | 733 | 853 | - | - | |
| Vivi919g00023 | 1065 | Gene3D | Transferase(Phosphotransferase) domain 1 | 854 | 1051 | - | - | |
| Vivi919g00023 | 1065 | SUPERFAMILY | RNI-like | 355 | 666 | - | - | |
| Vivi919g00023 | 1065 | Gene3D | Ribonuclease Inhibitor | 278 | 389 | IPR032675 | - | |
| Vivi919g00023 | 1065 | Gene3D | Ribonuclease Inhibitor | 29 | 184 | IPR032675 | - | |
| Vivi919g00023 | 1065 | Gene3D | Ribonuclease Inhibitor | 185 | 277 | IPR032675 | - | |
| Vivi919g00023 | 1065 | Gene3D | Ribonuclease Inhibitor | 390 | 703 | IPR032675 | - | |
| Vivi919g00023 | 1065 | Pfam | Protein kinase domain | 774 | 1043 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vivi919g00023 | 1065 | SMART | LRR_sd22_2 | 625 | 648 | - | - | |
| Vivi919g00023 | 1065 | SMART | LRR_sd22_2 | 555 | 578 | - | - | |
| Vivi919g00023 | 1065 | SMART | LRR_sd22_2 | 315 | 341 | - | - | |
| Vivi919g00023 | 1065 | SMART | LRR_sd22_2 | 218 | 244 | - | - | |
| Vivi919g00023 | 1065 | SUPERFAMILY | Protein kinase-like (PK-like) | 757 | 1045 | IPR011009 | - | |
| Vivi919g00023 | 1065 | FunFam | MDIS1-interacting receptor like kinase 2 | 854 | 1051 | - | - | |
| Vivi919g00023 | 1065 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 735 | 853 | - | - | |
| Vivi919g00023 | 1065 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 387 | 698 | - | - | |
| Vivi919g00023 | 1065 | Pfam | Leucine rich repeat N-terminal domain | 32 | 69 | IPR013210 | - | |
| Vivi919g00023 | 1065 | SUPERFAMILY | RNI-like | 78 | 399 | - | - | |
| Vivi919g00023 | 1065 | ProSiteProfiles | Protein kinase domain profile. | 773 | 1047 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi919g00023 | 4 | 947 | Receptor kinase-like Gene Family | AT4G08850 | 44.433 | 0.0 | 706 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Vivi919g00023 | Pkinase | 2.2e-43 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi919g00023 | - | - | gmx:100814634 | 1303.12 |