Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi919g00012 ATGCCTCCGAAAGTGGTGAAAAGAGGTGCTGCGGCGAAGAAAGCGAATCTTTCTTCAAAAACCGCAATTCAGAATCCGAAGCAAGAGCCTGAACCTGAACCCGTGAAGAATCATGAAGAAAGTCCTGTTGCTGATGTTGTGGCCGAAGAGAATCCCGTTGAGACAGTGCCTAATGGTTTGGCTGCGGTGGAAACAGAGAATGGGGAGGAGGTTAAGGACTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTCTGATCCTGACGAGTATGTTGGTGATGACTATGATGAGAGGGAAAATGAACAAGACGATGGTCAGGAGGGTGTAGATGAAGTGGAGGAAGAACTTGAAGAGATTATGGATGAAGAACTTGAAGAAATTGTGGATGAAGAAGATGGTGATACTGGCGAAGAAGTTGAGTATGTTTATGAAGAAGTTGAGGATGATGATGATGAGGATGCTGCTGCTGCTGGCAATGATGATGATCATGCCGGTATGAAGAACGAGCAGGAGCATCTGGCTGATGTGGAGAAAGAGGAGCAAGGTGAAGTTAGAAAGGAAAGACAGAAGCCGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGAATGCAACGGAGGATGATCTAAGGAAGATTTTCGGTAAAGTTGGGGAGATTACTAAAGCCAGGCTAATGAAGAATTCTCAGACTAAAAGGAACAAGGGGTTTGCATTATTGCGTTTCAAAACTGTTGAACAAGTGAAAAGAGCACTGGCAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCGGTATCACTCCATGTCAGGACAGTCATACTCTCTATTTAGATAACATTTGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGAAATTGAAAGTTTCAATGATTTGACTTTAGTAGAAGATGGTAACGATGAGGGAACAAACTGTGGATTTGCGCTTTTGGAATTTTCATCACGTTCAGATGCTAAGGAAGCCTATAAGCGGTTGCAGAAGAAAGATGTTGTTTTTGGAGTTGATAAGCCTGCTGAGGTTTCCTTTGCAGACTCCTTTGATGACCCGGAGGATGATATTATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTTCTTCATGGGATGAAGATTATGTCCGAAGTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACAGGCCAACTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCCACGCATGCTACTGCTGTGGAATGTGCTGAGAGCATTACCGGTGCAGGGTTAGGCGAAGGCAACAAAAAGGCAAAAGTCAGGGCTAGGTTGTTCAGACCTCTTCCGAAAGTACGTGGTAAACATGTTACTCGTAGTGACTTCTCTGGCCGCAAGCTTGGAAGGTCGGCAAGGCCTTCACTGAGTCGACCTTCACTGCGGAGTCGACTTGCACTACGGAGTCGACTTGGACCACCGATTCGACCTACACTACAGAGTCGACTTGGACCACCTAGTCGATCTGCTCGTGTTGAGAGAAGACATGGAAATAGTATTCCATCAGTTAGACCTTCTAGTTCGAGAAATAGACGTCCTGTCACAGCAGTGCCAGTAAGAGCTAGGCCACCCACTCCTCCAGCTAGATCCTATGAGAGGAGATTGACTGCTGCTTATCCAAAAGGTAGCATGAAGAGAGATTATGCTCGACCTGTGGATCTACCACCTACAAGAAGTAGAGTTTCTGCAGATTATGGCTCTCAGGTGGCCTCTCAAAGACATTCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGATCTGCATAGGAGCGCGTCTCGTACTGCACCAAGGAGGAGTCATCTAGATGACAGCTTTGATCAAAGACTTGAAAGGCCTCCTCCTCTTCCTTCCCATCTAAGTTATCGTGAAGGGCGCCCTCGTGATTATGACACACTATCTGGCTCAAAGCGTCCTTATGCTACCATAGATGATATTCCTCCACGGTATGCTGATGTTGATGCTCGCCAATCAAGATCTCGATTAAACTATGATTATGGAGGCAGTGTTTCAGAATATAGAGAGACTTATGGTGATAGGCTTGGAAGATCTAGTTTGGGATATAATAGTAGCAGTAGAAGTTCTACATCTATTCAAAACTCACATGGGACGTATAGCAGTCGACAGGACATGAGTTATGGAAGAGGTTCTATTGGTGGTAGTGATGGGGGTATCTACTCATCAAGTTATGGTGGGGATTACATATCTCGTGGAAGTGATGCTGGTGGCAGCTCGTATTCGTCCATGTATTCTAGCAGAGGTATGAACGGTAGTAGCAGTTACATGGGTGGTGGCGGATCTAGGTCTTATTATTGA 2418 0.4425 MPPKVVKRGAAAKKANLSSKTAIQNPKQEPEPEPVKNHEESPVADVVAEENPVETVPNGLAAVETENGEEVKDSIDEYEKDEHLDLEDNYHESDPDEYVGDDYDERENEQDDGQEGVDEVEEELEEIMDEELEEIVDEEDGDTGEEVEYVYEEVEDDDDEDAAAAGNDDDHAGMKNEQEHLADVEKEEQGEVRKERQKPKEFEVFVGGLDKNATEDDLRKIFGKVGEITKARLMKNSQTKRNKGFALLRFKTVEQVKRALAELKNPVINGKQCGITPCQDSHTLYLDNICKTWKKEALKEKLKHYEIESFNDLTLVEDGNDEGTNCGFALLEFSSRSDAKEAYKRLQKKDVVFGVDKPAEVSFADSFDDPEDDIMAQVKTVFIDLLPSSWDEDYVRSLLKKYGEVEKVELAKNRPTARRKNYGFVTFATHATAVECAESITGAGLGEGNKKAKVRARLFRPLPKVRGKHVTRSDFSGRKLGRSARPSLSRPSLRSRLALRSRLGPPIRPTLQSRLGPPSRSARVERRHGNSIPSVRPSSSRNRRPVTAVPVRARPPTPPARSYERRLTAAYPKGSMKRDYARPVDLPPTRSRVSADYGSQVASQRHSSYRDYPARDSGYSDLHRSASRTAPRRSHLDDSFDQRLERPPPLPSHLSYREGRPRDYDTLSGSKRPYATIDDIPPRYADVDARQSRSRLNYDYGGSVSEYRETYGDRLGRSSLGYNSSSRSSTSIQNSHGTYSSRQDMSYGRGSIGGSDGGIYSSSYGGDYISRGSDAGGSSYSSMYSSRGMNGSSSYMGGGGSRSYY 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi919g00012 805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Vivi919g00012 805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 350 IPR000504 GO:0003723
Vivi919g00012 805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 381 443 IPR000504 GO:0003723
Vivi919g00012 805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Vivi919g00012 805 Gene3D - 142 276 IPR012677 -
Vivi919g00012 805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 366 IPR000504 GO:0003723
Vivi919g00012 805 SMART rrm1_1 203 276 IPR000504 GO:0003723
Vivi919g00012 805 SMART rrm1_1 380 455 IPR000504 GO:0003723
Vivi919g00012 805 SMART rrm1_1 283 362 IPR000504 GO:0003723
Vivi919g00012 805 CDD RRM_SF 204 273 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 1 122 - -
Vivi919g00012 805 Gene3D - 368 491 IPR012677 -
Vivi919g00012 805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 379 455 IPR000504 GO:0003723
Vivi919g00012 805 MobiDBLite consensus disorder prediction 467 688 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 718 748 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 593 607 - -
Vivi919g00012 805 CDD RRM_SF 381 455 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 66 90 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 166 197 - -
Vivi919g00012 805 Coils Coil 110 141 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 609 644 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 153 197 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 91 122 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 31 45 - -
Vivi919g00012 805 SUPERFAMILY RNA-binding domain, RBD 202 348 IPR035979 GO:0003676
Vivi919g00012 805 SUPERFAMILY RNA-binding domain, RBD 373 453 IPR035979 GO:0003676
Vivi919g00012 805 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 31 800 - -
Vivi919g00012 805 MobiDBLite consensus disorder prediction 718 750 - -
Vivi919g00012 805 FunFam Heterogeneous nuclear ribonucleoprotein Q 282 365 - -
Vivi919g00012 805 Gene3D - 282 365 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi919g00012 204 442 Eukaryotic Initiation Factors Gene Family AT4G34110 22.764 7.73e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi919g00012 - - gmx:100811387 806.208