Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi919g00011 ATGCCTCCGAAAGTGGTGAAAAGAGGTGCTGCGGCGAAGAAAGCGAATCTTTCTTCAAAAACCGCAATTCAGAATCCGAAGCAAGAGCCTGAACCTGAACCCGTGAAGAATCATGAAGAAAGTCCTGTTGCTGATGTTGTGGCCGAAGAGAATCCCGTTGAGACAGTGCCTAATGGTTTGGCTGCGGTGGAAAAGAATGGGGAGGAGGTTAAGGACTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTCTGATCCTGACGAGTATGTTGGTGATGACTATGATGAGAGGGAAAATGAACAAGACGATGGTCAGGAGGGTGTAGATGAAGTGGAGGAAGAACTTGAAGAGATTATGGATGAAGAACTTGAAGAAATTGTGGATGAAGAAGATGGTGATACTGGCGAAGAAGTTGAGTATGTTTATGAAGAAGTTGAGGATGATGATGATGAGGATGCTGCTGCTGCTGGCAATGATGATGATCATGCCGGTATGAAGAACGAGCAGGAGCATCTGGCTGATGTGGAGAAAGAGGAGCAAGGTGAAGTTAGAAAGGAAAGACAGAAGCCGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGAATGCAACGGAGGATGATCTAAGGAAGATTTTCGGTAAAGTTGGGGAGATTACTAAAGCCAGGCTAATGAAGAATTCTCAGACTAAAAGGAACAAGGGGTTTGCATTATTGCGTTTCAAAACTGTTGAACAAGTGAAAAGAGCACTGGCAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCGGTATCACTCCATGTCAGGACAGTCATACTCTCTATTTAGATAACATTTGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGAAATTGAAAGTTTCAATGATTTGACTTTAGTAGAAGATGGTAACGATGAGGGAACAAACTGTGGATTTGCGCTTTTGGAATTTTCATCACGTTCAGATGCTAAGGAAGCCTATAAGCGGTTGCAGAAGAAAGATGTTGTTTTTGGAGTTGATAAGCCTGCTGAGGTTTCCTTTGCAGACTCCTTTGATGACCCGGAGGATGATATTATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTTCTTCATGGGATGAAGATTATGTCCGAAGTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACAGGCCAACTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCCACGCATGCTACTGCTGTGGAATGTGCTGAGAGCATTACCGGTGCAGGGTTAGGCGAAGGCAACAAAAAGGCAAAAGTCAGGGCTAGGTTGTTCAGACCTCTTCCGAAAGTACGTGGTAAACATGTTACTCGTAGTGACTTCTCTGGCCGCAAGCTTGGAAGGTCGGCAAGGCCTTCACTGAGTCGACCTTCACTGCGGAGTCGACTTGCACTACGGAGTCGACTTGGACCACCGATTCGACCTACACTACAGAGTCGACTTGGACCACCTAGTCGATCTGCTCGTGTTGAGAGAAGACATGGAAATAGTATTCCATCAGTTAGACCTTCTAGTTCGAGAAATAGACGTCCTGTCACAGCAGTGCCAGTAAGAGCTAGGCCACCCACTCCTCCAGCTAGATCCTATGAGAGGAGATTGACTGCTGCTTATCCAAAAGGTAGCATGAAGAGAGATTATGCTCGACCTGTGGATCTACCACCTACAAGAAGTAGAGTTTCTGCAGATTATGGCTCTCAGGTGGCCTCTCAAAGACATTCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGATCTGCATAGGAGCGCGTCTCGTACTGCACCAAGGAGGAGTCATCTAGATGACAGCTTTGATCAAAGACTTGAAAGGCCTCCTCCTCTTCCTTCCCATCTAAGTTATCGTGAAGGGCGCCCTCGTGATTATGACACACTATCTGGCTCAAAGCGTCCTTATGCTACCATAGATGATATTCCTCCACGGTATGCTGATGTTGATGCTCGCCAATCAAGATCTCGATTAAACTATGATTATGGAGGCAGTGTTTCAGAATATAGAGAGACTTATGGTGATAGGCTTGGAAGATCTAGTTTGGGATATAATAGTAGCAGTAGAAGTTCTACATCTATTCAAAACTCACATGGGACGTATAGCAGTCGACAGGACATGAGTTATGGAAGAGGTTCTATTGGTGGTAGTGATGGGGGTATCTACTCATCAAGTTATGGTGGGGATTACATATCTCGTGGAAGTGATGCTGGTGGCAGCTCGTATTCGTCCATGTATTCTAGCAGAGGTATGAACGGTAGTAGCAGTTACATGGGTGGTGGCGGATCTAGGTCTTATTATTGA 2415 0.4422 MPPKVVKRGAAAKKANLSSKTAIQNPKQEPEPEPVKNHEESPVADVVAEENPVETVPNGLAAVEKNGEEVKDSIDEYEKDEHLDLEDNYHESDPDEYVGDDYDERENEQDDGQEGVDEVEEELEEIMDEELEEIVDEEDGDTGEEVEYVYEEVEDDDDEDAAAAGNDDDHAGMKNEQEHLADVEKEEQGEVRKERQKPKEFEVFVGGLDKNATEDDLRKIFGKVGEITKARLMKNSQTKRNKGFALLRFKTVEQVKRALAELKNPVINGKQCGITPCQDSHTLYLDNICKTWKKEALKEKLKHYEIESFNDLTLVEDGNDEGTNCGFALLEFSSRSDAKEAYKRLQKKDVVFGVDKPAEVSFADSFDDPEDDIMAQVKTVFIDLLPSSWDEDYVRSLLKKYGEVEKVELAKNRPTARRKNYGFVTFATHATAVECAESITGAGLGEGNKKAKVRARLFRPLPKVRGKHVTRSDFSGRKLGRSARPSLSRPSLRSRLALRSRLGPPIRPTLQSRLGPPSRSARVERRHGNSIPSVRPSSSRNRRPVTAVPVRARPPTPPARSYERRLTAAYPKGSMKRDYARPVDLPPTRSRVSADYGSQVASQRHSSYRDYPARDSGYSDLHRSASRTAPRRSHLDDSFDQRLERPPPLPSHLSYREGRPRDYDTLSGSKRPYATIDDIPPRYADVDARQSRSRLNYDYGGSVSEYRETYGDRLGRSSLGYNSSSRSSTSIQNSHGTYSSRQDMSYGRGSIGGSDGGIYSSSYGGDYISRGSDAGGSSYSSMYSSRGMNGSSSYMGGGGSRSYY 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi919g00011 804 MobiDBLite consensus disorder prediction 592 606 - -
Vivi919g00011 804 CDD RRM_SF 380 454 - -
Vivi919g00011 804 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Vivi919g00011 804 Gene3D - 141 275 IPR012677 -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 90 121 - -
Vivi919g00011 804 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 454 IPR000504 GO:0003723
Vivi919g00011 804 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 442 IPR000504 GO:0003723
Vivi919g00011 804 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 349 IPR000504 GO:0003723
Vivi919g00011 804 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 271 IPR000504 GO:0003723
Vivi919g00011 804 Gene3D - 281 364 IPR012677 -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 717 749 - -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 608 643 - -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 151 197 - -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 1 121 - -
Vivi919g00011 804 CDD RRM_SF 203 272 - -
Vivi919g00011 804 FunFam Heterogeneous nuclear ribonucleoprotein Q 281 364 - -
Vivi919g00011 804 Coils Coil 60 80 - -
Vivi919g00011 804 Coils Coil 109 140 - -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 466 687 - -
Vivi919g00011 804 SMART rrm1_1 379 454 IPR000504 GO:0003723
Vivi919g00011 804 SMART rrm1_1 282 361 IPR000504 GO:0003723
Vivi919g00011 804 SMART rrm1_1 202 275 IPR000504 GO:0003723
Vivi919g00011 804 MobiDBLite consensus disorder prediction 717 747 - -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 31 45 - -
Vivi919g00011 804 SUPERFAMILY RNA-binding domain, RBD 372 452 IPR035979 GO:0003676
Vivi919g00011 804 SUPERFAMILY RNA-binding domain, RBD 201 347 IPR035979 GO:0003676
Vivi919g00011 804 MobiDBLite consensus disorder prediction 65 89 - -
Vivi919g00011 804 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 365 IPR000504 GO:0003723
Vivi919g00011 804 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 34 799 - -
Vivi919g00011 804 MobiDBLite consensus disorder prediction 165 197 - -
Vivi919g00011 804 Gene3D - 367 490 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi919g00011 203 441 Eukaryotic Initiation Factors Gene Family AT4G34110 22.764 8.55e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi919g00011 - - gmx:100811387 810.831