Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi90g00001 ATGCAATCCCAATCCAACTCACCCATCACACCAAAACCAATGACCTCCCTCACTCAAATCTTCCAAAACATTTTCTCAGATAACAGCAACATCATGCTTGCTGCCATCATTTCTTTACTACTAGTCATCCTCTTTGTCCTCCTTCTCCATCTCTATGCCAAATGGTTCCTTGCTCAAGCACATTCTCAAGCTCAAGCTCGCCGCCGCCGTCGCCGGAGAACAACTGTAACTGTCTCTGATGTCCTTGGCCCTGCCAGGTTCCATCACTTCCATACCTTCAACATTGAAGACTCACCTCTTTCCAGTTCACACACTAAAGGTCTTGACTCTTCCATCATTGCTTCTATTCCTTTGTTTGTTTACACACAAAAGAATGAAAGTGAACAAGAGGAGAAACTCGAGTGTGTGATTTGTTTGAGTGGCTTTGAGAACGGTGAAATGGGAAGGTGTTTGCAGAAATGTGGACATGGTTTTCATGTGGAGTGTATTGATATGTGGTTGAGTTCGCATTCTAATTGTCCTATTTGTAGAGGTTCAATTGTTGTTTTGGAGAAGGATGATTCTTCAGGTGTTGTTGATGATTCTTGTTCTGTTGAAATTGTGATTGAGGGAAGTTCCACCTCTGAGATTAGAGAGAGTGAACAAGGGAATGATAATATTGATAATGGAATTGGAAGGGTAAGTGATTCTGTTTCAGATCAAACTTCTTCTTCGTTGTTTGGTTGTTCTTTGAAGACAGTTTTCAACAAAGTTTTCACATCTTCCAATGTTAATGTTGTTGAATCACAATCTTGA 795 0.4075 MQSQSNSPITPKPMTSLTQIFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAHSQAQARRRRRRRTTVTVSDVLGPARFHHFHTFNIEDSPLSSSHTKGLDSSIIASIPLFVYTQKNESEQEEKLECVICLSGFENGEMGRCLQKCGHGFHVECIDMWLSSHSNCPICRGSIVVLEKDDSSGVVDDSCSVEIVIEGSSTSEIRESEQGNDNIDNGIGRVSDSVSDQTSSSLFGCSLKTVFNKVFTSSNVNVVESQS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi90g00001 264 CDD RING-H2_EL5-like 134 177 - -
Vivi90g00001 264 SMART ring_2 135 176 IPR001841 -
Vivi90g00001 264 Pfam Ring finger domain 134 177 IPR001841 -
Vivi90g00001 264 FunFam RING-H2 finger protein ATL1 93 182 - -
Vivi90g00001 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 182 IPR013083 -
Vivi90g00001 264 MobiDBLite consensus disorder prediction 208 227 - -
Vivi90g00001 264 SUPERFAMILY RING/U-box 125 183 - -
Vivi90g00001 264 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Vivi90g00001 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 183 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi90g00001 25 217 Rapid Response to Elicitors AT3G16720 35.323 7.98e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi90g00001 - - vvo:131624082 466.463