Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi907g00006 ATGTCTCGCCCTATTGAGCCATTGAAAGAGATCAATGATTCAAAAGATTTGTGGAAGATCGCTGTTAGATGCAAACATCTATGGACTGTCACAAGTTCTTCAAACAAAGAACACATGGAGATGGTTTTGGTTGATTCTAAGCGTGATATGATTCAGGCTGTTGTCCCTGCTTATTTGCTTTCGAAATTAAAATCTCAAATTGAAACAGGAAACTCTTATATCATGCAAAATTTTAAAGTTGGGAGGAATGATTTTGCTTTTAAGTCGACAAATCATACATACAAATTGGTTTTTTGTGGGTCAACTTCTGTTAAGAAGGCAGAATTTCCTGACATCCCTCATAACTACCTTAACATTATTGCTTTAAATTCCATAGTTGAAGGAAGGTTTCAATCAAATGTTTTGGTTGATTTGATTGGAGGAATCACTGATATCACTCAAACCCAAGTTAACGGTGACAACAGCAAGAACAGAATAGTTTTTTCAATTGTAGATGCCAGCAAAACAGTTGTACGTACTCTTTGGGGCCAACTTGCAGTTCAGCTATATGAGTATTATAAGAATAATAAGCAAGCATCAAATATTGTCATTGTGCTAATCAATGCAAGGGTTAAAGAGGCTCAAGGAGGATTTCCAGTTAGTGTTTCCAACACATGGAATGGACCGAAACTGTTGATTAATGACCTTGCTATTGAGGAAGTCAAGAGTCTAAAAGAAAGACTTGGTGTTGATTTGCCTTTGTTATCATCTTCAAGTGTACAAGTTGAGACGACGCAAAACTCATTTTATTCTGACTATGACAAATTTGTTTCGAAGGCTGAAATAATGAGTCTCTCTGAGATAACAAATCTGCAACATGAAACAACATGTGTTATCGTTGCTACCCACGATAAGTTTGATGCTGGGCAGATGGGGTGGTACTATGATGGATGTGTGGAATGTACAAGGAGTGTGACTGCCAAGGATGGAAAGCTGAAGTGTTTTAAGGATCATATTAGCCCAGAACCTGTGCCACGGTATAAGCTTGATATAACAGCTGTTGACGGCAGTTCGAAGGCAAAGTTCGTCTTTTGGGACACAGACTGCGTGAAGTTAATTGGGAAGTCTGCTCTTCAAATGAAGATGGATTTAACACAGTCTGTTGATTACGATCCACTTGAGTTCCCTTACGAACTTGACTCCATATTGGCAAAAGAATTGGCAATTAGAGCTGTTTATCAGCCTAAAAATGGGAGACTTTCTGTCATTGGCTTCAAGACTGATGAAGATGTGCGTAATAAAATTAAGGAGAGTTTCAAATTTGAAGAGACCTCAAAGCTTCGAGCACCAGAACCTCTGTCCCAGGATGACATGAATAGCATTTCTGAACCTCTATCTGCATCTGCAGAAAATGATCCGAGCATTGAAAATTCAGGACTCACTCCATGTAAGAGACTTATGAATGATGCAGTAGAAGATAATGATAGTGTACAACAATCATCAACCAAGATGGCCAAAGATATTAAACAGGAGAAATAG 1518 0.3827 MSRPIEPLKEINDSKDLWKIAVRCKHLWTVTSSSNKEHMEMVLVDSKRDMIQAVVPAYLLSKLKSQIETGNSYIMQNFKVGRNDFAFKSTNHTYKLVFCGSTSVKKAEFPDIPHNYLNIIALNSIVEGRFQSNVLVDLIGGITDITQTQVNGDNSKNRIVFSIVDASKTVVRTLWGQLAVQLYEYYKNNKQASNIVIVLINARVKEAQGGFPVSVSNTWNGPKLLINDLAIEEVKSLKERLGVDLPLLSSSSVQVETTQNSFYSDYDKFVSKAEIMSLSEITNLQHETTCVIVATHDKFDAGQMGWYYDGCVECTRSVTAKDGKLKCFKDHISPEPVPRYKLDITAVDGSSKAKFVFWDTDCVKLIGKSALQMKMDLTQSVDYDPLEFPYELDSILAKELAIRAVYQPKNGRLSVIGFKTDEDVRNKIKESFKFEETSKLRAPEPLSQDDMNSISEPLSASAENDPSIENSGLTPCKRLMNDAVEDNDSVQQSSTKMAKDIKQEK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi907g00006 505 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Vivi907g00006 505 Gene3D - 110 243 IPR012340 -
Vivi907g00006 505 MobiDBLite consensus disorder prediction 448 471 - -
Vivi907g00006 505 PANTHER OS03G0429900 PROTEIN 10 489 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi907g00006 505 SUPERFAMILY Nucleic acid-binding proteins 118 248 IPR012340 -
Vivi907g00006 505 MobiDBLite consensus disorder prediction 439 505 - -
Vivi907g00006 505 Gene3D - 260 428 IPR012340 -
Vivi907g00006 505 Gene3D - 2 107 IPR012340 -
Vivi907g00006 505 SUPERFAMILY Nucleic acid-binding proteins 274 405 IPR012340 -
Vivi907g00006 505 CDD RPA1_DBD_A_like 19 104 - -
Vivi907g00006 505 CDD RPA1_DBD_B_like 137 241 - -
Vivi907g00006 505 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi907g00006 1 370 Core DNA Replication Machinery Family AT5G08020 23.116 3.54e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi907g00006 - - vvo:131614721 828.55