Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi905g00025 ATGACAACCTATGCCACCGTTTTGTTTCTCTTCTTTGTCATGTTCATAACCACTTCCTTTTGTTTTCAAGAAATGGAGATTCTCCAAATGGCCAAAACACAAGTTTCACAAGCCATGAATTGGGTTGATAACTCTATGAAATTGCATGGCTTGGAGAGTGTGAGTATGGTCTCATCATTGAATCAAACAAGTGGTTTGGCTTTGAGAGATTGTGCTAAGCTTTATGAGGAGAGTGAGTTTAGGCTTAGGGATATGATGGTTGGAAAGAGGGGTCATAGTAAAGATGATGCTCTTATTTGGGTGAGTGCATTGATGACAAATCATAGGACTTGTTTGGATGGGTTGAAGGAAAAAGGGTATGTTGGAGATAATCATGTTTTGGGTAGAAACTTGACAAGTTTGCTTGGCCAAATGCTTGTTTTGTATTCAAATAACAAAGTCAAAGGCAAAGAGCAATCTCAAAGAATTACAATATTAGAAGAAAACAATGGACTTTTAGAATCATGGAGTGTTGCAAACCATGAAGCAGATTTCACAGTGGCACAAGATGGTTCTGGAAGTTATAGAACAATAAAAGAAGCAGTGGATGCACTTGCTTCAAGGGGGCATAATCGTCCTTCAAGAGTTGTCATACATGTTAAAGCAGGAGTGTACCATGAAAAAGTTGAGATTGGAAGTAAGTTGCATAATGTTATGTTTGTTGGAGATGGAATTGACAAAACTGTTGTCACTGGAAATAGAAATTTTAAGAGTGGCTCCAGCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTCTGGGCAAGAGACATGACATTTGAGAACACAGCCGGACCACAAAACCACCAAGCTGTAGCCCTGAAAGTAAGTTCAGACTTATCAGTCTTCTACAGATGCAGCTTCAAAGCCTACCAAGACACACTCTACCTATTCTCGAATCGACAATTCTACCGCGACTGTCACATCTATGGCACAATCGACTTCATATTCGGCGACGCGGCCGCGGTACTCCAAAACTGCGACATTGTCGTCCGAAAACCAATGAGCTACCAATCAAACTTCATAACCGCCCAAGGACGCGACAATCCCAACGAACCGACCGGATTTTCGATACAAAACTGTCGGGTTAGGCCGGATTCGGAATTTGCTACGGTGAAGGGTTCTGTGGAGACTTATTTAGGTAGGCCTTGGAAGAAGTATTCAAGGACAGTGTTTATGAAAAGTGATTTGGATGGTTTGGTTCATCCTAAAGGGTGGGGTGAATGGGAGGGGAGTTTCGCGATTTCGACTCTGTTTTATGGGGAATATATGAATACTGGAAATGGTGCTGCTACTGGAAATAGGGTTAGTTGGCCTGGTTTTCATGTGTTGAAGAGTGTTGAGGAAGCTTCTCCTTTTACAGTGAGTAGGTTTTTGCAAGGTGGGAATTGGATTTCAGCTTCTGGGGTGCCATTTGATTCTGGAATTTGA 1476 0.4187 MTTYATVLFLFFVMFITTSFCFQEMEILQMAKTQVSQAMNWVDNSMKLHGLESVSMVSSLNQTSGLALRDCAKLYEESEFRLRDMMVGKRGHSKDDALIWVSALMTNHRTCLDGLKEKGYVGDNHVLGRNLTSLLGQMLVLYSNNKVKGKEQSQRITILEENNGLLESWSVANHEADFTVAQDGSGSYRTIKEAVDALASRGHNRPSRVVIHVKAGVYHEKVEIGSKLHNVMFVGDGIDKTVVTGNRNFKSGSSTLNSATFDVSGDGFWARDMTFENTAGPQNHQAVALKVSSDLSVFYRCSFKAYQDTLYLFSNRQFYRDCHIYGTIDFIFGDAAAVLQNCDIVVRKPMSYQSNFITAQGRDNPNEPTGFSIQNCRVRPDSEFATVKGSVETYLGRPWKKYSRTVFMKSDLDGLVHPKGWGEWEGSFAISTLFYGEYMNTGNGAATGNRVSWPGFHVLKSVEEASPFTVSRFLQGGNWISASGVPFDSGI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi905g00025 491 ProSitePatterns Pectinesterase signature 2. 324 333 IPR033131 -
Vivi905g00025 491 Gene3D - 171 491 IPR012334 -
Vivi905g00025 491 PANTHER PECTINESTERASE 28 481 - -
Vivi905g00025 491 Coils Coil 490 491 - -
Vivi905g00025 491 SMART PMEI_2 11 141 IPR006501 GO:0004857
Vivi905g00025 491 SUPERFAMILY Pectin lyase-like 175 489 IPR011050 -
Vivi905g00025 491 FunFam Pectinesterase 171 491 - -
Vivi905g00025 491 Pfam Plant invertase/pectin methylesterase inhibitor 55 125 IPR006501 GO:0004857
Vivi905g00025 491 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 19 122 IPR035513 -
Vivi905g00025 491 CDD PMEI-like_4 6 143 - -
Vivi905g00025 491 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 144 IPR035513 -
Vivi905g00025 491 Pfam Pectinesterase 177 476 IPR000070 GO:0030599|GO:0042545
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi905g00025 1 491 Carbohydrate Esterase AT3G60730 49.904 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi905g00025 K01051 - gmx:100792852 707.212