Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi905g00015 ATGGCTTCGGTTCAACGTTCAAAACCAATGAAATCTGGAAGCTGTGACACTGTTGATGCATTAGGGTTTCTAAATGACACTCTAAAAGTTGCATTTCTTCATATAAGTGGTTTCAAAGCAAAAGTGGAGAGCTTGTTTATGCCGAATGAACATCCAACCACACTTTCATTATTAGAGTCCCAAGATGTTGCATCAGAGTTTTTGAAAGCAGTAAAAGTTGCCTCCAATAAAGAAGATTACGATGATTTTCTAAAAGTTATCAAAGATTACGGGGATAAAACTATTGATATGAGGTGTTTCTCGGCGAGGGTGAGTGTGTTGCTCAAAGGGCGTGCCGATTTAATTTTGGAGTTCAACAACTTCCTTCCAACGGAATATCATATGAGAGTTCCTCCTTGGGATCAACTTCCTTGGGATGTGCTTGATGTGGTTTCTAGAACACTAGATTTTGGCGATCTTGTTCAATTTTCTTGTGTTTGCGCGAATTGGAGAGATTTTCAGAAGAATCGAAGACGAGATATTGATGCGTTAAGGTTTCTAAAGAGAGTCAAAGTTGCATTTCGATATAACATGAAAAAGTATGGTCAATTTATGAAAGTCCTAAGCGATTACCGTGCAAACTCTCTTGATATAAATGGTGTCAAAGCAAAAGTCCAGAGCATGTTTGAAGGGCATGTGTATTTAATTTTGGAATTCAACAAATTCTTGCCGAAGAAACATCGAATCACACTTCCACCTGAGACTATGGTTAGTACTGCTAATTTCTAG 768 0.3802 MASVQRSKPMKSGSCDTVDALGFLNDTLKVAFLHISGFKAKVESLFMPNEHPTTLSLLESQDVASEFLKAVKVASNKEDYDDFLKVIKDYGDKTIDMRCFSARVSVLLKGRADLILEFNNFLPTEYHMRVPPWDQLPWDVLDVVSRTLDFGDLVQFSCVCANWRDFQKNRRRDIDALRFLKRVKVAFRYNMKKYGQFMKVLSDYRANSLDINGVKAKVQSMFEGHVYLILEFNKFLPKKHRITLPPETMVSTANF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi905g00015 255 ProSiteProfiles PAH domain profile. 51 125 IPR003822 GO:0006355
Vivi905g00015 255 Gene3D Paired amphipathic helix 64 123 IPR036600 GO:0006355
Vivi905g00015 255 Gene3D Paired amphipathic helix 175 237 IPR036600 GO:0006355
Vivi905g00015 255 SUPERFAMILY PAH2 domain 175 238 IPR036600 GO:0006355
Vivi905g00015 255 CDD F-box_SF 134 166 - -
Vivi905g00015 255 SUPERFAMILY F-box domain 128 168 IPR036047 GO:0005515
Vivi905g00015 255 PANTHER SIN3B-RELATED 173 247 IPR039774 GO:0003714
Vivi905g00015 255 Pfam Paired amphipathic helix repeat 193 236 IPR003822 GO:0006355
Vivi905g00015 255 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Vivi905g00015 255 ProSiteProfiles PAH domain profile. 170 239 IPR003822 GO:0006355
Vivi905g00015 255 SUPERFAMILY PAH2 domain 64 124 IPR036600 GO:0006355
Vivi905g00015 255 Gene3D - 133 170 - -
Vivi905g00015 255 FunFam Paired amphipathic helix protein Sin3 175 237 - -
Vivi905g00015 255 Pfam F-box domain 133 173 IPR001810 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi905g00015 175 247 WRKY Transcription Factor Family AT4G12020 42.466 1.94e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi905g00015 PAH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi905g00015 - K11644 vvo:131637698 516.153