Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi902g00021 ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGCGTAGTAGGTCCAAATTTGAGTGTTTCATCCACTACTATACCACCCGCTCCCGTGTTTTACCCAACCGAAGATGAATTCAAAGATCCTCTGGAGTTTATTTACAAGATTAGACCCGTAGCTGAACCGTTTGGGATTTGTAGAATCGTTCCTCCTAGCAACTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTCACTTTTCCGACTAAGACACAGGCTATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAGACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGAAGAAGATTGTGTTTGAAGGGGAGGATTTGGATTTGTGTAAGCTTTTTAATGGTGTGAAGAGGTTTGGGGGGTATGATAAGGTTGTGGATGGAAAGAAATGGGGTGAGGTTGCTAGGTTTGTGAAATCTTCGGGGAAGATTTCGGATTGTGCTAAGCATGTCTTGTGTCAGTTGTATAGGGAGCATCTTTATGATTATGAAATTTATTGTAACCGGATTAATAAAGGAATGACCGCCAGCACTTGTAAGACAAGTGTGGAGGTGGAGGAAGATTGTAAGAGTGATCACGGGGTACAGGTACAGGTACAAGCTTCGGTGTCGAAGAAGCATCACGGAGTTGTAGATGGTTTGAAAGTTAAGGATCGGAAAGTAAAGGAAGAAAATCGGAAAGTAAAGGAAGTAAACCGTGATCAGAGTTGTGAGCAATGTAAAAGTGGGTTGCATGGAGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGGTGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATCCCTCTTGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGATAGGGACAGTTTTGGTTTTGTGCCCGGGAAGCAATATTCGTTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCTGTTTCCAGGGTGCAAATAGAGAAAAAATTCTGGGAGATAGTGGAAGGTTCAGTTGGTGAGGTCGAGGTCATGTATGGAAATGATTTGGATACATCTATCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCGCAATCTATTGATGATAAGTTATGGGAAGAATACTCTACTAATCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATAGGAATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGAAGCCTTCCTGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGTGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGAAATTTTGTCATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATACGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCACGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACAGCAGAGGGTCATCTTATTTGAAAATTGAATTGCTGAAAATACTCGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGTATTGTTAAATCTTCTCGTTTAGCTCCTCGGAAGTGTCCCCAATATGTAGGAACTGAAGAGGATCCAGCATGCATCATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCATTGGGAACACCTTTGTGAGTGCAAAACTGCTAAACTCCGTCTTCTCTATCGTCATTCACTTGGTGAATTGAATGACTTGGCATTTTCAATTGACAAATATATTTCTGAAGAAAAAGCTGAGAGTAGAAGTGCAAAAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGTAGCTCCATTACGTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTGTTATCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGGGATATGGTAAGGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTCACAAAAATTGAATTGAAGTTGAGTCATCAAGACTCAAGTTTCAAGAAAATTCATATAGATTATGTTAATGAGTTACTGACATTTAACCCTGTACCATGCAACGAGCCTCATTATCATAAGTTGAAGGAATATGCAAAAGAAGCAAGGTTGTTAGTTCAAGACATTGAGACTGCTTTGTCAACATGTTCCAATTTGTCTGAGTTGGAACTTCTATACTCTAGAGCTTGTGGAATACCCATCTACGTGAAAGGGACTAAAAAATTAAAAAGGAAGATTTCTTCAACCAAGGCGTGGATGGATAGTGTCAGAAGCTGCATTTCAGTTAGAGATCCTGCTGAATTAGATGTTGATGTTCTTTACAAGTTAAAATCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCGCTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATCTCGTAGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCAGAGTTGAGGTTACTAAGGAATTACCATTCAGATGCTGTGTCGTGGGTTTCTCACTTTAATGATGTTTTAGGGAGAGTTCACAGACAGGGCGATCATCATAATGCAGTTGATGAATTGAAAAGCATTCTTGATAAAGGTTTCTCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTCAAGAAGGCTATTTGCCGACAAAAAGCTTCCAAGGCACATGATTCTAAGATGCACCTCGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTGGGAATTGAGGGAGAGAAGCAATTCGTCAGTTTATCACGTGTGCTTGGTGTTGCCATGCGTTGGGAGGAAAGAGCTGAAGAGATTCTTTCATCTGAGGCTTCTATTTCTGATTTTGAGGACATGCTAAGAGCTTCAGAAAATATTTTTGTTAATCTTGCCTTACTTAATGATGTCAAAGAAGCGTTATCGGAAGCTAATTCTTGGTTAAGGAATGCAAAGCCATATTTAGCATCATCTAATTGTGTGTCAAACTCTGTAAATGTCGGGGACTTGCAATTGTTGGTTTCTCAATCAAAGCATCTTAAAGTACATTTAGAAGAAAGAAGGACGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGCGCTTATTTGAATTGGATAATACTGTTCATGGAATAAGCAGTGGTTTATTGTTTAAAATGGAAGATTTGATTACAAGAATTCAGTCTGCCATAGCATCTGGTGCATCTCTTGGTTTTGACTTCAGTGATATTTCAAAGCTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAAAGGATGTTTTGGAAGTTGCGGAAGGCCTCTCTCATTCCGCTGTTTCTGGTGCTCTTTTGAAAGTTCTAGTTAATGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATATCTAAACCTTGCAATTCTATAAGATGTAAATTAACTGATATTCAAGATATTCTTACCGATTATCAGATTATTAAAATGACCTTTACGGATGTAAATTGTCAACTTGAAGAAGCCATTGGAAAGCATATGTTGTGGCAAGAGCAAGTGCATCAATTTTTTCGTCTAAGTTCTAGGGAACGAACTTGGTCATCATTATTGCAGCTCAAGGAACTTGGAGATTCTGTTGCCTTTAGTTGTTCAGAACTTGACTCAATATTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATTGACAATATTGGAGCTTTATTCCAAAATGAAAAATCGCTGCTTCATGCACTGCTGAAGATAAAACAGACTCTAGATAGATCGCTATACATATATGGCAAGTTGCAAAATCAGAAGGAACCAAACCTATGCAACTGCTGCTTTGTTGATTCTCAAGACCAGGACTTTCTTACTTGTTCCACTTGTATGGACCGCTATCACTTGCGGTGCATTGGACTAACAGAAACAGATGCTGGCCTTGGCGACTACAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAATATTCAAATGGAAGTTCCCTCCTGAGGTTCGAGAAACATATTGAATTGAACATCCTTGTCGAACTTCTGTCTGATGCTGAATGTTTTTCTCTGTGGATTGACGAAAAAGATTTTCTGAACCAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGACAGAAATAGTGAACCATTCATCAACTTATGTCGACAAAGATATTACCATCATCTCTAAAAAATTGATCACTGCGATAAAGGCAGGCTAG 4764 0.4011 MGKGKPRAVEKGVVGPNLSVSSTTIPPAPVFYPTEDEFKDPLEFIYKIRPVAEPFGICRIVPPSNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKLFNGVKRFGGYDKVVDGKKWGEVARFVKSSGKISDCAKHVLCQLYREHLYDYEIYCNRINKGMTASTCKTSVEVEEDCKSDHGVQVQVQASVSKKHHGVVDGLKVKDRKVKEENRKVKEVNRDQSCEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKQYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIYGSGFPNETNQKPQSIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRRSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKIELLKILDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTAKLRLLYRHSLGELNDLAFSIDKYISEEKAESRSAKKQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASVIALRKAEQFLWAGSEMDSVRDMVRSLTEAQKWAEGIKDCVTKIELKLSHQDSSFKKIHIDYVNELLTFNPVPCNEPHYHKLKEYAKEARLLVQDIETALSTCSNLSELELLYSRACGIPIYVKGTKKLKRKISSTKAWMDSVRSCISVRDPAELDVDVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQSRSMLEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNDVLGRVHRQGDHHNAVDELKSILDKGFSLKIQVDELPLVEIELKKAICRQKASKAHDSKMHLEFIQQLLKEATMLGIEGEKQFVSLSRVLGVAMRWEERAEEILSSEASISDFEDMLRASENIFVNLALLNDVKEALSEANSWLRNAKPYLASSNCVSNSVNVGDLQLLVSQSKHLKVHLEERRTLELVLNNCKKWECEAHSLLDDAQRLFELDNTVHGISSGLLFKMEDLITRIQSAIASGASLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLKDVLEVAEGLSHSAVSGALLKVLVNGVEWLRRALEGISKPCNSIRCKLTDIQDILTDYQIIKMTFTDVNCQLEEAIGKHMLWQEQVHQFFRLSSRERTWSSLLQLKELGDSVAFSCSELDSILSEVEKVENWKKRCIDNIGALFQNEKSLLHALLKIKQTLDRSLYIYGKLQNQKEPNLCNCCFVDSQDQDFLTCSTCMDRYHLRCIGLTETDAGLGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVELLSDAECFSLWIDEKDFLNQLIEKAFACKSGLTEIVNHSSTYVDKDITIISKKLITAIKAG 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi902g00021 1587 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vivi902g00021 1587 SMART bright_3 96 190 IPR001606 GO:0003677
Vivi902g00021 1587 CDD PHD_RSF1 258 302 - -
Vivi902g00021 1587 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Vivi902g00021 1587 Pfam C5HC2 zinc finger 638 690 IPR004198 -
Vivi902g00021 1587 ProSiteProfiles JmjC domain profile. 395 561 IPR003347 -
Vivi902g00021 1587 ProSiteProfiles Zinc finger PHD-type profile. 255 305 IPR019787 -
Vivi902g00021 1587 SUPERFAMILY FYVE/PHD zinc finger 251 305 IPR011011 -
Vivi902g00021 1587 SMART JmjN_1 27 68 IPR003349 -
Vivi902g00021 1587 SMART cupin_9 395 561 IPR003347 -
Vivi902g00021 1587 Gene3D Cupin 28 546 - -
Vivi902g00021 1587 CDD ARID 97 185 - -
Vivi902g00021 1587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 305 IPR013083 -
Vivi902g00021 1587 SMART ARID_2 95 185 - -
Vivi902g00021 1587 Gene3D - 78 199 IPR036431 GO:0003677
Vivi902g00021 1587 Pfam PLU-1-like protein 1154 1408 IPR013637 -
Vivi902g00021 1587 Pfam PLU-1-like protein 904 1201 IPR013637 -
Vivi902g00021 1587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1439 1504 IPR013083 -
Vivi902g00021 1587 Pfam jmjN domain 29 62 IPR003349 -
Vivi902g00021 1587 SUPERFAMILY FYVE/PHD zinc finger 1449 1499 IPR011011 -
Vivi902g00021 1587 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vivi902g00021 1587 ProSitePatterns Zinc finger PHD-type signature. 258 302 IPR019786 -
Vivi902g00021 1587 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Vivi902g00021 1587 SUPERFAMILY ARID-like 78 194 IPR036431 GO:0003677
Vivi902g00021 1587 ProSitePatterns Zinc finger PHD-type signature. 1453 1497 IPR019786 -
Vivi902g00021 1587 Coils Coil 235 255 - -
Vivi902g00021 1587 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1047 - -
Vivi902g00021 1587 Pfam PHD-finger 258 304 IPR019787 -
Vivi902g00021 1587 Pfam JmjC domain, hydroxylase 428 544 IPR003347 -
Vivi902g00021 1587 SUPERFAMILY Clavaminate synthase-like 350 576 - -
Vivi902g00021 1587 FunFam Predicted protein 363 566 - -
Vivi902g00021 1587 SMART PHD_3 1452 1498 IPR001965 -
Vivi902g00021 1587 SMART PHD_3 257 303 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi902g00021 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 6.55e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi902g00021 PLU-1 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi902g00021 K11446 - gmx:100789512 2501.09