Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi902g00020 ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGCGTAGTAGGTCCAAATTTGAGTGTTTCATCCACTACTATACCACCCGCTCCCGTGTTTTACCCAACCGAAGATGAATTCAAAGATCCTCTGGAGTTTATTTACAAGATTAGACCCGTAGCTGAACCGTTTGGGATTTGTAGAATCGTTCCTCCTAGCAACTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTCACTTTTCCGACTAAGACACAGGCTATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAGACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGAAGAAGATTGTGTTTGAAGGGGAGGATTTGGATTTGTGTAAGCTTTTTAATGGTGTGAAGAGGTTTGGGGGGTATGATAAGGTTGTGGATGGAAAGAAATGGGGTGAGGTTGCTAGGTTTGTGAAATCTTCGGGGAAGATTTCGGATTGTGCTAAGCATGTCTTGTGTCAGTTGTATAGGGAGCATCTTTATGATTATGAAATTTATTGTAACCGGATTAATAAAGGAATGACCGCCAGCACTTGTAAGACAAGTGTGGAGGTGGAGGAAGATTGTAAGAGTGATCACGGGGTACAGGTACAGGTACAAGCTTCGGTGTCGAAGAAGCATCACGGAGTTGTAGATGGTTTGAAAGTTAAGGATCGGAAAGTAAAGGAAGAAAATCGGAAAGTAAAGGAAGTAAACCGTGATCAGAGTTGTGAGCAATGTAAAAGTGGGTTGCATGGAGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGGTGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATCCCTCTTGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGATAGGGACAGTTTTGGTTTTGTGCCCGGGAAGCAATATTCGTTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCTGTTTCCAGGGTGCAAATAGAGAAAAAATTCTGGGAGATAGTGGAAGGTTCAGTTGGTGAGGTCGAGGTCATGTATGGAAATGATTTGGATACATCTATCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCGCAATCTATTGATGATAAGTTATGGGAAGAATACTCTACTAATCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATAGGAATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGAAGCCTTCCTGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGTGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGAAATTTTGTCATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATACGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCACGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACAGCAGAGGGTCATCTTATTTGAAAATTGAATTGCTGAAAATACTCGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGTATTGTTAAATCTTCTCGTTTAGCTCCTCGGAAGTGTCCCCAATATGTAGGAACTGAAGAGGATCCAGCATGCATCATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCATTGGGAACACCTTTGTGAGTGCAAAACTGCTAAACTCCGTCTTCTCTATCGTCATTCACTTGGTGAATTGAATGACTTGGCATTTTCAATTGACAAATATATTTCTGAAGAAAAAGCTGAGAGTAGAAGTGCAAAAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGTAGCTCCATTACGTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTGTTATCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGGGATATGGTAAGGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTCACAAAAATTGAATTGAAGTTGAGTCATCAAGACTCAAGTTTCAAGAAAATTCATATAGATTATGTTAATGAGTTACTGACATTTAACCCTGTACCATGCAACGAGCCTCATTATCATAAGTTGAAGGAATATGCAAAAGAAGCAAGGTTGTTAGTTCAAGACATTGAGACTGCTTTGTCAACATGTTCCAATTTGTCTGAGTTGGAACTTCTATACTCTAGAGCTTGTGGAATACCCATCTACGTGAAAGGGACTAAAAAATTAAAAAGGAAGATTTCTTCAACCAAGGCGTGGATGGATAGTGTCAGAAGCTGCATTTCAGTTAGAGATCCTGCTGAATTAGATGTTGATGTTCTTTACAAGTTAAAATCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCGCTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATCTCGTAGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCAGAGTTGAGGTTACTAAGGAATTACCATTCAGATGCTGTGTCGTGGGTTTCTCACTTTAATGATGTTTTAGGGAGAGTTCACAGACAGGGCGATCATCATAATGCAGTTGATGAATTGAAAAGCATTCTTGATAAAGGTTTCTCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTCAAGAAGGCTATTTGCCGACAAAAAGCTTCCAAGGCACATGATTCTAAGATGCACCTCGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTGGGAATTGAGGGAGAGAAGCAATTCGTCAGTTTATCACGTGTGCTTGGTGTTGCCATGCGTTGGGAGGAAAGAGCTGAAGAGATTCTTTCATCTGAGGCTTCTATTTCTGATTTTGAGGACATGCTAAGAGCTTCAGAAAATATTTTTGTTAATCTTGCCTTACTTAATGATGTCAAAGAAGCGTTATCGGAAGCTAATTCTTGGTTAAGGAATGCAAAGCCATATTTAGCATCATCTAATTGTGTGTCAAACTCTGTAAATGTCGGGGACTTGCAATTGTTGGTTTCTCAATCAAAGCATCTTAAAGTACATTTAGAAGAAAGAAGGACGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGCGCTTATTTGAATTGGATAATACTGTTCATGGAATAAGCAGTGGTTTATTGTTTAAAATGGAAGATTTGATTACAAGAATTCAGTCTGCCATAGCATCTGGTGCATCTCTTGGTTTTGACTTCAGTGATATTTCAAAGCTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAAAGGATGTTTTGGAAGTTGCGGAAGGCCTCTCTCATTCCGCTGTTTCTGGTGCTCTTTTGAAAGTTCTAGTTAATGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATATCTAAACCTTGCAATTCTATAAGATGTAAATTAACTGATATTCAAGATATTCTTACCGATTATCAGATTATTAAAATGACCTTTACGGATGTAAATTGTCAACTTGAAGAAGCCATTGGAAAGCATATGTTGTGGCAAGAGCAAGTGCATCAATTTTTTCGTCTAAGTTCTAGGGAACGAACTTGGTCATCATTATTGCAGCTCAAGGAACTTGGAGATTCTGTTGCCTTTAGTTGTTCAGAACTTGACTCAATATTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATTGACAATATTGGAGCTTTATTCCAAAATGAAAAATCGCTGCTTCATGCACTGCTGAAGATAAAACAGACTCTAGATAGATCGCTATACATATATGGCAAGTTGCAAAATCAGAAGGAACCAAACCTATGCAACTGCTGCTTTGTTGATTCTCAAGACCAGGACTTTCTTACTTGTTCCACTTGTATGGACCGCTATCACTTGCGGTGCATTGGACTAACAGAAACAGATGCTGGCCTTGGCGACTACAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAATATTCAAATGGAAGTTCCCTCCTGAGGTTCGAGAAACATATTGAATTGAACATCCTTGTCGAACTTCTGTCTGATGCTGAATGTTTTTCTCTGTGGATTGACGAAAAAGATTTTCTGAACCAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGACAGAAATAGTGAACCATTCATCAACTTATGTCGACAAAGATATTACCATCATCTCTAAAAAATTGATCACTGCGATAAAGGCTAGCAAAGTGGCTGTTGTCCATGATCAGGGTGATAGTTGTGACCTTGAGTTGGCTTTAGCAAAATACTTATGGAAGGTTCAAGTCGATATATTGTTAAGTGGTGCAGTTAAGCCCACTATTGAAGAGATTCAGAAACATCTGAAAGAGGGAATGTCTATGGAAATATCACCCAAAGATCACTATATGCTGAAACTTACAAATGTGAAGTGCTTGGGCTTGCACTGGGTAGAACTAGCCAAAAAGATATCAAATGATTCTGGAGCACTCGGCCTAGATAAAGTATATGAACTTATATTGGAAGGTGAAAACTTGCCTGTTGATGTAAATGAGGAACTCAAGATGTTAAGAGCTCGATGCATGCTTTATTGTATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATTGCATGTTATCGATGTAGTGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACGCAAGATATCTACATTTGCCCTGCATGCAACCCGTGTACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTAGAGGAGCCTAAAACCCCTTCTCCCAGGCATAATAACCCCATAAAGAAACGGAAGAGAGATGTGCCCAGTGACACTTGCAAGGTACATGCACCCAGGAATGAAGATGATAGTAATTTTAGGTTAGATGGGATAGAATGTCTAAGGTGGAAAATTCGCAAGTCATTTAGAAGAGTAACTAAAAGACGTGTTGATCTTCAAAGTCTCTCTCCATTTATATGGATAAAACCATAA 5532 0.4004 MGKGKPRAVEKGVVGPNLSVSSTTIPPAPVFYPTEDEFKDPLEFIYKIRPVAEPFGICRIVPPSNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKLFNGVKRFGGYDKVVDGKKWGEVARFVKSSGKISDCAKHVLCQLYREHLYDYEIYCNRINKGMTASTCKTSVEVEEDCKSDHGVQVQVQASVSKKHHGVVDGLKVKDRKVKEENRKVKEVNRDQSCEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKQYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIYGSGFPNETNQKPQSIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRRSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKIELLKILDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTAKLRLLYRHSLGELNDLAFSIDKYISEEKAESRSAKKQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASVIALRKAEQFLWAGSEMDSVRDMVRSLTEAQKWAEGIKDCVTKIELKLSHQDSSFKKIHIDYVNELLTFNPVPCNEPHYHKLKEYAKEARLLVQDIETALSTCSNLSELELLYSRACGIPIYVKGTKKLKRKISSTKAWMDSVRSCISVRDPAELDVDVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQSRSMLEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNDVLGRVHRQGDHHNAVDELKSILDKGFSLKIQVDELPLVEIELKKAICRQKASKAHDSKMHLEFIQQLLKEATMLGIEGEKQFVSLSRVLGVAMRWEERAEEILSSEASISDFEDMLRASENIFVNLALLNDVKEALSEANSWLRNAKPYLASSNCVSNSVNVGDLQLLVSQSKHLKVHLEERRTLELVLNNCKKWECEAHSLLDDAQRLFELDNTVHGISSGLLFKMEDLITRIQSAIASGASLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLKDVLEVAEGLSHSAVSGALLKVLVNGVEWLRRALEGISKPCNSIRCKLTDIQDILTDYQIIKMTFTDVNCQLEEAIGKHMLWQEQVHQFFRLSSRERTWSSLLQLKELGDSVAFSCSELDSILSEVEKVENWKKRCIDNIGALFQNEKSLLHALLKIKQTLDRSLYIYGKLQNQKEPNLCNCCFVDSQDQDFLTCSTCMDRYHLRCIGLTETDAGLGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVELLSDAECFSLWIDEKDFLNQLIEKAFACKSGLTEIVNHSSTYVDKDITIISKKLITAIKASKVAVVHDQGDSCDLELALAKYLWKVQVDILLSGAVKPTIEEIQKHLKEGMSMEISPKDHYMLKLTNVKCLGLHWVELAKKISNDSGALGLDKVYELILEGENLPVDVNEELKMLRARCMLYCICRKPFDPGRMIACYRCSEWYHFDCMKLSCTQDIYICPACNPCTGLPTNHDRLTTGKLEEPKTPSPRHNNPIKKRKRDVPSDTCKVHAPRNEDDSNFRLDGIECLRWKIRKSFRRVTKRRVDLQSLSPFIWIKP 1843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi902g00020 1843 Gene3D Cupin 21 555 - -
Vivi902g00020 1843 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vivi902g00020 1843 SMART bright_3 96 190 IPR001606 GO:0003677
Vivi902g00020 1843 CDD PHD_RSF1 258 302 - -
Vivi902g00020 1843 SUPERFAMILY FYVE/PHD zinc finger 1703 1756 IPR011011 -
Vivi902g00020 1843 SMART PHD_3 1708 1750 IPR001965 -
Vivi902g00020 1843 SMART PHD_3 1452 1498 IPR001965 -
Vivi902g00020 1843 SMART PHD_3 257 303 IPR001965 -
Vivi902g00020 1843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1439 1504 IPR013083 -
Vivi902g00020 1843 Pfam PHD-finger 258 304 IPR019787 -
Vivi902g00020 1843 ProSiteProfiles JmjC domain profile. 395 561 IPR003347 -
Vivi902g00020 1843 ProSiteProfiles Zinc finger PHD-type profile. 255 305 IPR019787 -
Vivi902g00020 1843 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Vivi902g00020 1843 SMART JmjN_1 27 68 IPR003349 -
Vivi902g00020 1843 ProSitePatterns Zinc finger PHD-type signature. 1709 1749 IPR019786 -
Vivi902g00020 1843 SMART cupin_9 395 561 IPR003347 -
Vivi902g00020 1843 Gene3D - 86 194 IPR036431 GO:0003677
Vivi902g00020 1843 CDD ARID 97 185 - -
Vivi902g00020 1843 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Vivi902g00020 1843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1693 1751 IPR013083 -
Vivi902g00020 1843 SMART ARID_2 95 185 - -
Vivi902g00020 1843 FunFam Predicted protein 363 566 - -
Vivi902g00020 1843 Pfam JmjC domain, hydroxylase 428 544 IPR003347 -
Vivi902g00020 1843 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vivi902g00020 1843 ProSitePatterns Zinc finger PHD-type signature. 258 302 IPR019786 -
Vivi902g00020 1843 SUPERFAMILY Clavaminate synthase-like 350 576 - -
Vivi902g00020 1843 ProSitePatterns Zinc finger PHD-type signature. 1453 1497 IPR019786 -
Vivi902g00020 1843 SUPERFAMILY FYVE/PHD zinc finger 251 305 IPR011011 -
Vivi902g00020 1843 SUPERFAMILY ARID-like 78 194 IPR036431 GO:0003677
Vivi902g00020 1843 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1028 - -
Vivi902g00020 1843 Coils Coil 235 255 - -
Vivi902g00020 1843 Pfam PLU-1-like protein 904 1201 IPR013637 -
Vivi902g00020 1843 Pfam PLU-1-like protein 1154 1408 IPR013637 -
Vivi902g00020 1843 SUPERFAMILY FYVE/PHD zinc finger 1449 1499 IPR011011 -
Vivi902g00020 1843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 310 IPR013083 -
Vivi902g00020 1843 Pfam jmjN domain 29 62 IPR003349 -
Vivi902g00020 1843 MobiDBLite consensus disorder prediction 1763 1794 - -
Vivi902g00020 1843 Pfam C5HC2 zinc finger 638 690 IPR004198 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi902g00020 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 7.28e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi902g00020 PLU-1 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi902g00020 K11446 - gmx:100789512 2905.16