Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi89g00006 ATGTGCAGCGTATCAAATAGAAAACCCTCTCAAGACTATGGGAGACAAGAAGAAATGCATTATAAGGTTTCTGATTTACTTCTGTTTTCAGCCACAGATGATGTAATAGCTTTCAAAGAGGCTGTTGAAAATGACAACCATGATGTCAATGAGGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGAACACCACTTATGATTGCTACCTTATTCGGAAGCAAGGGTGTACTGTCATATATTCTTGAAACCGGCCGTGTTGATGTTAACCAAAAGTGCGGCTCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCCAACGGTAACCGGTGCATTGACTTGATTCTCATGATGTCTAATAGTATCTCAGGTTCAAAGAAGAGGTTACTACAAGCCATACTAGGTGAATTTAGGATGTGGGATGATATTGATGAATACAATGATTTCCTCAAGGAAGTAGGTTTCCAAATGGAGAAGCAGCAACAAGATATTGGTACACCTCGAATTGAGAAGAAAGATTATCCGATTGATCTACCCCTACCCGACATAAACAATGGGATATATAGTACAGATGAGTTTAGGATGTATATATTCAAAGTGAGGACTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGAGAAAACGCAAGGCGTCGTGATCCCATGATATATCATTATACCTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTCCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGTAAAGATGAGACCGAATGCACCCGAAGAGTCTGCTTTTTTGCGCACAAACCTGAGGAGCTTCGGCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCTTATTCAAATTCACCTAGTGCTTCTTCAATGGATTACTACTCATTGAGCTCTCCGTCCAGTTCGACACAATCCATGTCGACACCGCCTTTGACTCCATCTGCCGTGTCATCTCCTGCAGCTGGAACCATGTGGCCGACTCAGTCTCATGCCGCAGTCCCTACACTTCAGTTGCCGAGAAGCAGATTGAAAACTGCATTGAATGCTAGAGAAGATACTGAATTTCTCGAACTTGAAAATCGCCTTTTGCAGAAGCTAATGATTGAAGAGATGACAGCTCTTTCATTCCCTTCAAATAGGCTTGCAGTTGTGAATCCTGCTAACTTCGAAGACATTCTCGGTTCTCAGATACAATCTCCAACATCAACTCATGTGCATCCTAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTACCGATTCAAATGTGATTGGATCACCGCAGATCACCATTGATCCGTTTATGAATTCAAAAAATGATGCCCTGTCGAAGCGGAGCCAGAGCTTTATCGAGCGCAGCAGCATCGAAAGCTTTAGTTCTAAGCTTCCTTCTTCTACCTCGGTTGCTATGGAGCCATATACTAACTTGTCTGGTTGGGGCTCCCATGATGGAAAATTAGACTGGTCCATCCTCGGTGATGAACTGAATAAGTCTTATTCTTTCGGCTTTCAAAACCAACATAGCAATTCAACAATGGTTGAGCAAAATGCTGATGATCAAGATGTATTATTAAGCCAGGAATCATGGGTTAGTTCACTTGTGAAAGATTCTCCAACAGTGCAATCGGAACAATATTGTGTTGAAGAGTAA 1836 0.4254 MCSVSNRKPSQDYGRQEEMHYKVSDLLLFSATDDVIAFKEAVENDNHDVNEVGLWYGRRIGSKEMGYEERTPLMIATLFGSKGVLSYILETGRVDVNQKCGSDRATALHCAVSGCSAASAEVIKLLLDASADVNSVDANGNRCIDLILMMSNSISGSKKRLLQAILGEFRMWDDIDEYNDFLKEVGFQMEKQQQDIGTPRIEKKDYPIDLPLPDINNGIYSTDEFRMYIFKVRTCSRAYSHDWTECPFVHPGENARRRDPMIYHYTCVPCPEFRKGSCSKGDACEYAHGIFESWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPSASSMDYYSLSSPSSSTQSMSTPPLTPSAVSSPAAGTMWPTQSHAAVPTLQLPRSRLKTALNAREDTEFLELENRLLQKLMIEEMTALSFPSNRLAVVNPANFEDILGSQIQSPTSTHVHPNVTQQLWGFSSDLTDSNVIGSPQITIDPFMNSKNDALSKRSQSFIERSSIESFSSKLPSSTSVAMEPYTNLSGWGSHDGKLDWSILGDELNKSYSFGFQNQHSNSTMVEQNADDQDVLLSQESWVSSLVKDSPTVQSEQYCVEE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi89g00006 611 Gene3D - 264 327 - -
Vivi89g00006 611 ProSiteProfiles Zinc finger C3H1-type profile. 269 291 IPR000571 GO:0046872
Vivi89g00006 611 PANTHER UNKEMPT FAMILY MEMBER 29 599 IPR045234 -
Vivi89g00006 611 SUPERFAMILY Ankyrin repeat 32 145 IPR036770 -
Vivi89g00006 611 Gene3D - 22 164 IPR036770 -
Vivi89g00006 611 ProSiteProfiles Ankyrin repeat profile. 103 138 IPR002110 GO:0005515
Vivi89g00006 611 SMART ANK_2a 68 98 IPR002110 GO:0005515
Vivi89g00006 611 SMART ANK_2a 103 135 IPR002110 GO:0005515
Vivi89g00006 611 SMART c3hfinal6 299 322 IPR000571 GO:0046872
Vivi89g00006 611 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Vivi89g00006 611 Pfam Ankyrin repeats (3 copies) 41 137 IPR002110 GO:0005515
Vivi89g00006 611 FunFam Zinc finger CCCH domain-containing protein 66 222 290 - -
Vivi89g00006 611 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 289 IPR000571 GO:0046872
Vivi89g00006 611 MobiDBLite consensus disorder prediction 358 384 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi89g00006 8 599 C2H2 Transcription Factor Family AT5G12850 40.152 6.48e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi89g00006 Ank_2 1.1e-07 CL0465