Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi89g00005 AATGAGTTTAGGATGTATGTATTCAAAGTGCAGACTTGTTCAAGGGCTTATTCTCATGACTGGACTGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATGATATATCATTACACCTGTGTCCCTTGTCCTGAGTTTCGAAAGGGATCATGCAGTAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCCTTGTAAAGATGAGACCGAATGCACCCGAAGAGTCTGCTTTTTTGCGCACAAACCCGAAGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTTCTTTGCCTTCACCTATATCATATTCAAATTCACCTAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTATCCATCCAGTTTGATACAATCCATGTCGACACCGCCTTTGACTCCATCAGCAGTGTCTTCTCTTGCAAGTGGAACCATGTGGCCGACTCAGTCTCATGCTGCAGTCTCTACACTTCAGATGCCGAGAAGCAGATTGAAAACTGCATTGAATGCTAAAGATGATACTGAATTTCTCGAACTTGAAAATCTTCTTTTGCAGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATTTCCTTCAAATAGGCTTGCAAGTGTGAGTACTGCTAACCTCGATGATATTGTCGGTTTTCAGATACAATCTCCAACATCAACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTCCCAATTCAAATGTGATTGGATCACTACAGATCACTGTTGATCCGTCTATGAATTCAAAAAATGATGCCCTGTCGAAGCGGAGCCAGAGCTTTATCGAGCGCAGTAGCATGGGAAGCTTTACTTCTAAGCTTCCTTCTGCTACCTCGATTGCTATGGAGCCATATACTAACTTCTCAGGTTGGGGCTCGCCTGATGGAAAATTAGACTGGTCCATCCATGGTGATGAACTGAATAAGATGAAAAAGTCTTATTCTTTCGGCTTTCGAAACCAACTTAGCAATTCAACAATGGTTGCACAAAATCCTGATGAGCAAGATGTATTATTAAGGCAGGAATCATGGGTCTACAATTCTTTATGCACATTATGTCTTAAAGTCACTTTAAATATTTTTTATCAAATCAATCAAAATTTTTTAATTGACCCTCTTTGCCTTTGTGGTTCGAAATCTGTTTCTGTCTAG 1236 0.4159 NEFRMYVFKVQTCSRAYSHDWTECPFVHPGENARRRDPMIYHYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRPCKDETECTRRVCFFAHKPEELRPLYASTGSSLPSPISYSNSPSASSMDSFTLSYPSSLIQSMSTPPLTPSAVSSLASGTMWPTQSHAAVSTLQMPRSRLKTALNAKDDTEFLELENLLLQKLMIEEMTGLSFPSNRLASVSTANLDDIVGFQIQSPTSTHVHPNVTQQLWGFSSDLPNSNVIGSLQITVDPSMNSKNDALSKRSQSFIERSSMGSFTSKLPSATSIAMEPYTNFSGWGSPDGKLDWSIHGDELNKMKKSYSFGFRNQLSNSTMVAQNPDEQDVLLRQESWVYNSLCTLCLKVTLNIFYQINQNFLIDPLCLCGSKSVSV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi89g00005 411 Gene3D - 43 105 - -
Vivi89g00005 411 FunFam Zinc finger CCCH domain-containing protein 66 1 68 - -
Vivi89g00005 411 PANTHER UNKEMPT FAMILY MEMBER 2 378 IPR045234 -
Vivi89g00005 411 SMART c3hfinal6 42 68 IPR000571 GO:0046872
Vivi89g00005 411 SMART c3hfinal6 77 100 IPR000571 GO:0046872
Vivi89g00005 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 67 IPR000571 GO:0046872
Vivi89g00005 411 ProSiteProfiles Zinc finger C3H1-type profile. 47 69 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi89g00005 1 345 C2H2 Transcription Factor Family AT5G12850 41.710 3.14e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi89g00005 zf-CCCH 6.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi89g00005 - - vvo:131624061 801.586