Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi89g00003 ATGTGCAACATATCAAATACAAAAGTCTCTCAAGAATATGGAAGACAAGAAGAAATGCATTATAAGGTTTCTGATCTGCTAGTGTTTTCAGCCACAGATGATGTAATAGCTTTCAAAGAGGCTGTTGAAAAAGACAACATTGATGTCAATGAGGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAATGGCATATGAAGAGAGGACACCTCTCATGATTGCTTCTTTATTTGGAAGCAAGGCTGTTTTGTCTTATATTCTTGAAACTGGCCATGTCGACGTTAACCAAACATGCGGATCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCTGAGATTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCGAACGGTAACAGGTGCATTGACTTGATTGTCATGATGCCTATCTCCGGTTCAAAGAAGCGGATATTACAAGCCATACTAGAAGGTACTGATTATGACAGTGATTTCCTTAAAGAAGTAGGTTTCCAAATGAAGGAGAAATATGATATTGGTACACCTCGAATTGAGAAGAAAGATTATCCGATGGATCTATCCCTACCCGACATAAACAATGGAATATATAGTACAGATGAATTTAGGATGTATATATTCAAAGTGAAGACGTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGCCGTGATCCGATGATATATCAATACACCTGTGTCCCTTGTCCCGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGCTTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAAGATGAGACCGAATGCACCCGAAGAGTCTGCTTTTTCGCGCACAAGCCCGAGGAGCTTAGGCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCAAATTCACCTAGTGCTTCTTCAATGGATTATTTCTCATTGAGCTCTCCGTCCAGTTCGACAAAATCCATGTCGACACCGCCTTTGACTCCAACTGCAGCGACATCTCCTGCAGGTGGCACGATGTGGCCAACTCAATCTTATGCTGCAGTTCCTACTCTTCAGATGCCGAGAAGCAGATTGAAAACTGCTTTGAATGCTAGAGATGAAACTGAATTTCTTGAACTTGAAAATCGCCTTTTGCAGAAGCTAATGATTGAAGAGATGTCAGGTCTTTCATTCCCTTCAAATAGGCTTGCAGATGTGAATCCTGCTAACCTTGAAGACATTCTCAGTTCTCAGATACAATCTCCAACATCAACTCATGTGCATCCAAATGTAACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTACCAATTCAAATGTGATTGGATCACCACAGATCACCATTGATCCATTTATGAATTCAAAAAATGATGCCATGTCGAAACGGAGCCAGAGCTTTATCGAGCACAGCAGCATGGCGAGCTTTAGTTCTAAGAATCCTTCAGTTAGCTCGGTTGCTGCTATGCAGCCATATAGTAACTTCTCTGGATGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATTCGTGGTGATGAACTGAATAAGATGAAAAAGTCTTATTCTTTCGGCTTTCGAAACCAACTTAGCAATTCAACAATGGTTGCGCAAAATGATGATGATCAGGACGTATTGTTAAGGCAGGAATCATGGGTTAGTTCACTTGTGAAGGATTCTCCAACAGTGCAATCGGAACAATATTGTGTTGAAGAGTGA 1821 0.4206 MCNISNTKVSQEYGRQEEMHYKVSDLLVFSATDDVIAFKEAVEKDNIDVNEVGLWYGRRIGSKEMAYEERTPLMIASLFGSKAVLSYILETGHVDVNQTCGSDRATALHCAVSGCSAASAEIIKLLLDASADVNSVDANGNRCIDLIVMMPISGSKKRILQAILEGTDYDSDFLKEVGFQMKEKYDIGTPRIEKKDYPMDLSLPDINNGIYSTDEFRMYIFKVKTCSRAYSHDWTECPFVHPGENARRRDPMIYQYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPSASSMDYFSLSSPSSSTKSMSTPPLTPTAATSPAGGTMWPTQSYAAVPTLQMPRSRLKTALNARDETEFLELENRLLQKLMIEEMSGLSFPSNRLADVNPANLEDILSSQIQSPTSTHVHPNVTQQLWGFSSDLTNSNVIGSPQITIDPFMNSKNDAMSKRSQSFIEHSSMASFSSKNPSVSSVAAMQPYSNFSGWGSPDGKLDWSIRGDELNKMKKSYSFGFRNQLSNSTMVAQNDDDQDVLLRQESWVSSLVKDSPTVQSEQYCVEE 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi89g00003 606 Pfam Ankyrin repeats (3 copies) 61 137 IPR002110 GO:0005515
Vivi89g00003 606 SMART c3hfinal6 255 281 IPR000571 GO:0046872
Vivi89g00003 606 SMART c3hfinal6 290 313 IPR000571 GO:0046872
Vivi89g00003 606 ProSiteProfiles Ankyrin repeat profile. 103 138 IPR002110 GO:0005515
Vivi89g00003 606 Gene3D - 255 318 - -
Vivi89g00003 606 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Vivi89g00003 606 MobiDBLite consensus disorder prediction 350 374 - -
Vivi89g00003 606 PANTHER UNKEMPT FAMILY MEMBER 29 594 IPR045234 -
Vivi89g00003 606 SUPERFAMILY Ankyrin repeat 35 159 IPR036770 -
Vivi89g00003 606 SMART ANK_2a 103 135 IPR002110 GO:0005515
Vivi89g00003 606 SMART ANK_2a 68 98 IPR002110 GO:0005515
Vivi89g00003 606 Gene3D - 22 163 IPR036770 -
Vivi89g00003 606 FunFam Zinc finger CCCH domain-containing protein 66 213 281 - -
Vivi89g00003 606 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 280 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi89g00003 6 594 C2H2 Transcription Factor Family AT5G12850 40.122 6.32e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi89g00003 Ank_2 8.4e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi89g00003 - - psat:127084564 886.715