Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi895g00010 ATGGAACCATGCACAAAAGACTGTGTTAAATCCGAAGAAGATGTTACTCGTGAGGATAACTCCGTTTCTGTTATTATTTCCAACCCAAAACTTCTCGATTGCTGCAACTGTTCTAAACCCTTAACTATTCCAGTCTTTCAGTGTGATAATGGTCATACTGTTTGCTCAACCTGTTTTCCTGAACTTATGAACAAGTGTATCAAGTGTTCATTACCCATTTGCTCAAAACGTTGTAAAGTCATAGAGAATATTCTGCAATCTATGGAAATGCCATGTCCAAATGAAGAATATGGTTGTAGGGAGACAATAACTTATAGTGAAAAGAGAAAGCATGAAGAAAGATGCAGCTATGCACCATGTTACTGTCCCCTTTTAGGTTGTGACTTTGTTGCTTCATCCCGAGCGTTGTCGAACCATTTCAGCCATAAACACGGGGACTCTCTCATCAAATTTTCTTATAGTCAATCCTTCACTGTATCCTTGAAGTCCAATGTTGAAACCATTGTTCTTCTAGAAAAAAAATCTGGCAAATTATTTGTTCTCAATAATAGTGCTATGCTTTTGGGAAATTCAGTCAATATTAGCCGCATTGGCCCTAACTCTTTTGTGGCATGTTATGGTTATGATATATTGGCTAGGTCCAAGAAATGCAGTCTAAAATTGCATTCTTCGGCGGAGAATGTCCAGAAGGTTACTTTAGCAAGTAATCAATCGGAGTTTCTCGTGATTCCATCTTGTTATTTTGGCTCTTCTAAATCTGTCAAACTAGAAATTTGCATAACCCGCAAGATGCAAATCTTTCTAAAAGATCTGACTGGAAAGACGATCACTCTGATTGTTGAGAGTTCCGACACCATAGCCAATGTGAAGGAGGTGATTTCTGATAAGGTTGGGGGGATCCCAGTCGACCAGCAACGCCTGATCTGTTATGGTAAACAACTAGATGACCTCCACACCATCGCAGATTACAACATCCAAGAGAATTCAACCCTCCACCTCCTACTCCGTCTCCTTGGAGGATCCTTACCTTGA 1032 0.3992 MEPCTKDCVKSEEDVTREDNSVSVIISNPKLLDCCNCSKPLTIPVFQCDNGHTVCSTCFPELMNKCIKCSLPICSKRCKVIENILQSMEMPCPNEEYGCRETITYSEKRKHEERCSYAPCYCPLLGCDFVASSRALSNHFSHKHGDSLIKFSYSQSFTVSLKSNVETIVLLEKKSGKLFVLNNSAMLLGNSVNISRIGPNSFVACYGYDILARSKKCSLKLHSSAENVQKVTLASNQSEFLVIPSCYFGSSKSVKLEICITRKMQIFLKDLTGKTITLIVESSDTIANVKEVISDKVGGIPVDQQRLICYGKQLDDLHTIADYNIQENSTLHLLLRLLGGSLP 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi895g00010 343 SMART ubq_7 264 336 IPR000626 GO:0005515
Vivi895g00010 343 SUPERFAMILY TRAF domain-like 90 261 - -
Vivi895g00010 343 Gene3D - 258 342 - -
Vivi895g00010 343 Pfam Seven in absentia protein family 77 186 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi895g00010 343 ProSiteProfiles Zinc finger SIAH-type profile. 87 145 IPR013010 GO:0008270
Vivi895g00010 343 SUPERFAMILY Ubiquitin-like 244 340 IPR029071 -
Vivi895g00010 343 PRINTS Ubiquitin signature 317 338 IPR019956 -
Vivi895g00010 343 PRINTS Ubiquitin signature 274 294 IPR019956 -
Vivi895g00010 343 ProSiteProfiles Ubiquitin domain profile. 264 340 IPR000626 GO:0005515
Vivi895g00010 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 10 262 IPR044286 -
Vivi895g00010 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 140 IPR013083 -
Vivi895g00010 343 FunFam Polyubiquitin-C 264 340 - -
Vivi895g00010 343 Pfam Ubiquitin family 266 337 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi895g00010 264 340 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 74.026 3.04e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi895g00010 K04506 - mtr:11432566 395.971