Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi895g00004 ATGATGGAGTGTGATGTTGAAGACAATAATTTCATTGAGTGGCTCAAACCATCAAATAATTCCTCTCTTTCATCTCTATCTTCTTCATCTTCATCACCATCATCTTTTTCTACCACTCATAATGATCTTGTTCATGAGACTTTTCAATTCTTTCCTTTGAGTGCAAAAGCATCAAAAGAGGAAGATCATGAAGTGCCAAAAACGGAGGGTTTTGATGTGAAGGAAGAAAATATTACTATGGCTTTGCATATTGGATTACCTAACAATAAAGAAGATATTGATGAGGATGAGAAGAAGATTTTTCATGTTAAAGAAGAAGAGATTTGTAAGAAGAGTTTTCAAAGGTTTTGGATACCAACTCCTGCACAGATTCTTATTGGACCTATGCAGTTTGTTTGCTCCATATGCAACAAAACATTCACTAGGTTTAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGACCAGAATCACTTAGAGGAACACAACCAGCTGCAATGCTTAGACTACCATGCTATTGTTGTGCTCAAGGTTGCAAGAACAACATTAATCATCCAAGAGCTAAGCCTTTGAAAGACTTTAGAACTCTCCAAACTCACTACAAAAGAAAACATGGGACAAAGCCATTTATGTGTAGGAAATGTGGGAAAACATTAGCTGTTAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGCAAGTTGTGGTATTGTATTTGTGGTTCGGATTTTAAACACAAAAGATCTCTCAAAGATCATGTTAGGTCTTTCAGAAAGGGTCATGATCGAGTTCAGAGTCATGACGATCGAGCTTTTGATGAGGAGAAGGAATGTGTTACTGGTTCAGATGAAGATGGAGTTGTTCGTATATGA 888 0.3716 MMECDVEDNNFIEWLKPSNNSSLSSLSSSSSSPSSFSTTHNDLVHETFQFFPLSAKASKEEDHEVPKTEGFDVKEENITMALHIGLPNNKEDIDEDEKKIFHVKEEEICKKSFQRFWIPTPAQILIGPMQFVCSICNKTFTRFNNMQMHMWGHGSEFRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVRSFRKGHDRVQSHDDRAFDEEKECVTGSDEDGVVRI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi895g00004 295 SUPERFAMILY beta-beta-alpha zinc fingers 107 154 IPR036236 -
Vivi895g00004 295 SUPERFAMILY beta-beta-alpha zinc fingers 200 235 IPR036236 -
Vivi895g00004 295 Gene3D Classic Zinc Finger 130 153 - -
Vivi895g00004 295 SMART c2h2final6 215 235 IPR013087 -
Vivi895g00004 295 SMART c2h2final6 178 210 IPR013087 -
Vivi895g00004 295 SMART c2h2final6 131 153 IPR013087 -
Vivi895g00004 295 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Vivi895g00004 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Vivi895g00004 295 FunFam Zinc finger protein WIP2 184 266 - -
Vivi895g00004 295 Gene3D Classic Zinc Finger 178 273 - -
Vivi895g00004 295 PANTHER ZINC FINGER PROTEIN WIP2 16 275 IPR043584 GO:0003700|GO:0010468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi895g00004 7 285 C2H2 Transcription Factor Family AT1G08290 51.652 2.58e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi895g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi895g00004 - - gmx:100802773 431.024