Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi894g00004 ATGTCAACAAGCACCCAAGTGGTGGTTCTCGACAACGGCGGAGGTCTAATCAAAGCAGGATTCGGCGGCGAACGCAACCCCTCCGCCATTCTCCCCAACTGTCTCCACAAACCCCTCGCCTCCAAAAAATGGCTCCACCCAAATCCCCTCAACACCCCCGCCTCCGCCGACCAAGACCTCACCTCCGCCTCCGTCCGCCGTCCCATGGATCGCGGCTACCTAATAAACCCCGACCTCCAGCGCGAAATCTGGTCCCACCTCTTCACCTCCATCCTTCGCATAAACCCTTCCCAATCCTCCCTCCTCCTCACCGAACCCCTCTTCTCTCTCCCTTCCATCCAACACTCCCTTGACGAACTCGTCTTTGAAGATTTCAACTTCACCTCCCTCTACGTCGCTGACTCCCCTTCCCTCGTTCATCTCTACGAAACCAGCCGCAGCCCTAACGGCCTTCTCTCTAAAGCACAATGCAGTCTCGTCGTCGATTGCGGTTTCTCCTTCACGCACGCTTCACCTGTCTTTCAAAACTTCACTCTCAACTACGCGGTTAAGCGAATCGATTTAGGTGGAAAAGCCCTAACGAACTACCTCAAGGAACTTATTTCCTTTCGCTCTGTTAATGTCATGGATGAAACCTTCATCATTGACGATGTTAAGGAGAATCTCTGCTTTGTTTCTGTTGATGTCCCAAGACACCTTGACATTGCTAGAAAGAGTGGAAGAGAGAATCTCTTGAGGTGTACTTATGTGCTACCTGATGGTGTCTCGCACACAAAAGGGTTTCTTAAATATCCTGAACAAGCTAAGAGGTATCTTGTTCCTGATTGTAAGAAGGAGAATATCGATGATCACGAGGAAATTCCTCAACAACAGCATGAGAACAATAGACAGAAAGTTGATTTGACCAAAAATGAATTTGACTTGACCAATGAACGGTTTCTTGTCCCAGAGATGATTTTCCGTCCAGCTGATTTGGGAATGAACCAGGCTGGGCTTCCAGATTGTATCGTACGAGCAGTAAATGCCTGCCATCCGCACCTCCACCCCGTACTCTATGAAAGCATCATTTTAACTGGTGGGAGCACCTTGTTTCCTCACTTTGCTGAGAGACTAGAGAAGGAGCTTCGGCCTTTGTTTCCTGATGACTATAATGTGAAGATAACTACACAAGAAGATCCCCTATTAGGTGTTTGGCGTGGAGGGTCTCTCCTGGCATCAAGTCCCGATTTTGATTCAATGTGTGTGACTAAGGCTGAGTATGAGGAGCATGGTTCTGCTAGATGTCGCAAGAGATTTTTTCATTGA 1305 0.4858 MSTSTQVVVLDNGGGLIKAGFGGERNPSAILPNCLHKPLASKKWLHPNPLNTPASADQDLTSASVRRPMDRGYLINPDLQREIWSHLFTSILRINPSQSSLLLTEPLFSLPSIQHSLDELVFEDFNFTSLYVADSPSLVHLYETSRSPNGLLSKAQCSLVVDCGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELISFRSVNVMDETFIIDDVKENLCFVSVDVPRHLDIARKSGRENLLRCTYVLPDGVSHTKGFLKYPEQAKRYLVPDCKKENIDDHEEIPQQQHENNRQKVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLPDCIVRAVNACHPHLHPVLYESIILTGGSTLFPHFAERLEKELRPLFPDDYNVKITTQEDPLLGVWRGGSLLASSPDFDSMCVTKAEYEEHGSARCRKRFFH 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi894g00004 434 SUPERFAMILY Actin-like ATPase domain 3 139 IPR043129 -
Vivi894g00004 434 Gene3D Actin; Chain A, domain 2 35 68 - -
Vivi894g00004 434 SMART actin_3 5 433 IPR004000 -
Vivi894g00004 434 FunFam Actin-related protein 6 133 193 - -
Vivi894g00004 434 Gene3D - 133 399 - -
Vivi894g00004 434 Pfam Actin 4 433 IPR004000 -
Vivi894g00004 434 PANTHER ACTIN 7 425 IPR004000 -
Vivi894g00004 434 CDD NBD_sugar-kinase_HSP70_actin 8 200 - -
Vivi894g00004 434 FunFam Putative actin-related protein 5 397 425 - -
Vivi894g00004 434 SUPERFAMILY Actin-like ATPase domain 156 433 IPR043129 -
Vivi894g00004 434 Gene3D Actin; Chain A, domain 4 194 331 - -
Vivi894g00004 434 Gene3D - 8 425 - -
Vivi894g00004 434 FunFam Putative actin-related protein 6 194 279 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi894g00004 6 433 Cytoskeleton Gene Families AT3G18780 28.241 4.25e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi894g00004 K11662 - gmx:100819827 697.582