Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi893g00003 ATGGATTCCTTATCACAATGCCTTGGAATTAACCATCAAGGACGTTCAAGGAAACACCTGCATACACAAAAAGAAAACAACCCAGTGCCTTGGATCCATAAAGAGCCTTACGGGAATTTTAGGAAAGTTCAAGATGCTATAAATGCTGCGGGGAGGAGAAGGTTTAAGACGAGATTTGTTATTCATGTGAAGAGAGGTGTTTATAGAGAGAATATTGAAGTTGGGAAGATGAATGATAATGTTATGTTGGTTGGTGATGGGAGTAGGATTACGGTGATAACGAGTAATAGGAATGTTAAAGCTGGATTTACTACCTATAGTTCTGCCACTGCAGGAATTGATGGTCTTCACTTCATTGCACGCGACATTACATTTGAAAACACAGCAGGACCTCATCGAGGTCAAGCAGTCGCGCTACGATCAGCTTCTGATCTATCTGTCTTTTACCGTTGTTCATTTAAAGGCTACCAAGACACTCTTATGGTTCACGCGCAACGTCAATTTTTCAGAGAATGTTACATCTATGGAACTGTCGATTTTATTTTTGGTAATGCAGCAGTAGTGTTTCAAAATTGCATCATTCTTGTAAGAAGACCTCTAAACGGCCAAGCAAACATGATCACAGCCCAAGGTCGAGATGATCCATTTCAGAACACTGGAATTTCAATTCATAATTCTCAAATTAGAGCTGCGCCAGATTTCAAACCCGTTGTTGGAAGATTCAATACCTTCTTGGGCCGACCTTGGCAAAGATACTCTAGAGTTGTGGTTATGAAATCATTCATGGATAATTTGATAAGCCCAATGGGTTGGTCTCCATGGGGAGGTACTAATTTTGCTCAAAGCACTCTATTTTATGGAGAGTATAATAACATTGGGCCGGGCTCATCAACAAGGAATAGAGTAAGATGGTCGGGTTATCATGTTATGAAAAGCCCAGCCCAAGCAATACCATTCACTGTTAATAACCTGCTTGCTGGTGCCACGTGGTTACCTTCCACTGGTGTACCATTCACTTCTGGCCTTTAA 1029 0.4111 MDSLSQCLGINHQGRSRKHLHTQKENNPVPWIHKEPYGNFRKVQDAINAAGRRRFKTRFVIHVKRGVYRENIEVGKMNDNVMLVGDGSRITVITSNRNVKAGFTTYSSATAGIDGLHFIARDITFENTAGPHRGQAVALRSASDLSVFYRCSFKGYQDTLMVHAQRQFFRECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFKPVVGRFNTFLGRPWQRYSRVVVMKSFMDNLISPMGWSPWGGTNFAQSTLFYGEYNNIGPGSSTRNRVRWSGYHVMKSPAQAIPFTVNNLLAGATWLPSTGVPFTSGL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi893g00003 342 PANTHER PECTINESTERASE 35 332 - -
Vivi893g00003 342 ProSitePatterns Pectinesterase signature 2. 174 183 IPR033131 -
Vivi893g00003 342 Gene3D - 30 342 IPR012334 -
Vivi893g00003 342 Pfam Pectinesterase 35 327 IPR000070 GO:0030599|GO:0042545
Vivi893g00003 342 SUPERFAMILY Pectin lyase-like 32 341 IPR011050 -
Vivi893g00003 342 FunFam Pectinesterase 23 342 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi893g00003 25 342 Carbohydrate Esterase AT3G47400 66.771 2.10e-155 447