Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi892g00006 ATGAACTCACTATCTTACTTCTTCCATCATCTTCTCCTCCTCACACTTCTTCTCCCACTTTCCTCTTCAACCAATGAACTCACTACCCTACTTTCATGGACACAACCCTCCAGAAACCACCCTACACCCCCTTTTTCCAACATAAACCCCCTAGACACAAATCCATGCAAATGGTCATTCATAACATGCTCTTCACAAAACCTTGTAACAGAAATCATCATCCAAAATGTCCAATTAGCCCTTCCTTTTCCTCCAAACATCTCTTCATTTTCCAGCCTTCAAAAGTTAGTTATTTCAGGTACCAACCTCACTGGAACTATTCCATCTGAAATAGGTAACTGTCTTAACCTAATCACCATTGATCTTAGCTCAAATAGTCTTGTTGGTGAAATTCCTTCATCTATTGGAAACCTAAAAAATCTTGAAAACTTGATTCTTAACTCTAACCAATTATCTGGTTCTATTCCAATTAGGGTTGGTGATTGTGTTAGTCTCAAAACCCTAGATATTTTCGATAACAACCTTACCGGAAACCTTCCACATGAATTAGGGAATCTTTCAAATCTTCAAGTTATAAGAGCTGGTGGAAACAAAGACATTGTAGGGAAGATTCCAGAAGAGTTAGGTGAATGCAAGAACTTGACTATTCTAGGGCTTGCAGACACTAGAATTTCTGGTTCAATACCTAGTTCATTAGGTAAGTTAACATTGCTTCAAACTATATCTATTTATAGTACTTTGATTTCGGGTGAAATTCCTCGTGAAATCGGTAACTGTTCCGAGCTTGTGAACTTGTTTTTGTACGAGAATGATCTTTCTGGTGAGATTCCTTTTGAAATAGGTAAGCTTGTGAAGCTTGAAAAGATTTTGTTATGGCAGAATAGTTTTGTTGGTGGAATACCTGATGAGATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTGTCTTTGAATTTTCTCTCCGGTGGAATACCGAAGAGTGTAGGGAAGTTGTCGAATCTTGAAGAGCTTATGTTGAGTAATAATAACATTTCGGGTTCGATACCGGGTTCGATTTCAAATCTTACGAATTTGATTCAGTTGCAGTTGGATACAAATGAGATATCGGGTTTGATTCCGGCTGAGATTGGTAAGTTGACAAAGCTAACGGTTTTTTTCGCTTGGCAGAATAGGCTTGAAGGGAGAATTCCGTCGGAGTTAGGAGATTGTTTGAGCCTCGAGGCTTTGGATTTGTCTTATAATGATCTCAGTGATAGTTTACCTTCAAATCTTTTTACGCTTCGGAATTTAACCAAGCTTTTGTTGATTTCTAATGATATCTCTGGCTCTATTCCTCCTGAGATTGGTAATTGTAGTTCTCTCATTCGACTCCGTCTCGTAGATAACAAAATCAATGGTGAGATACCGAGAGAGATAGGTTTTCTTAATAACCTTAGCTTCCTTGATTTGTCTGGAAATCGTCTTAGTGGTTCGGTACCATTGGAGATTGGAAAATGCAGAGAACTTCAAATGTTGAATCTAAGTAATAACTCGCTTTCTGGTGATTTGCATAGTTATTTGTCTTCTCTTACAATGCTAGAGGTTTTGGATGTTTCGATGAATAATTTTTCTGGCGAGGTTCCAATGAGTATTGGTCAATTAACTTCACTTCTTAGAGTTACTTTAAGCAAAAACTCTTTCTCTGGATCAATTCCTTCGACTCTTGGGAAATGTTCAGGTATTCAACTTCTCGACCTTAGCAAAAACATGTTCTCGGGTAGCATACCGCGCGAGTTGTTTCAAATTGAAGCACTTGATATTGCTTTAAATTTGAGTCACAATGCATTATCAGGAGTGATACCGGTTGAGATTTCGGCTCTTAACAAGTTGTCTGTTTTAGACATTTCACATAACAATCTTGAAGGTGACTTGATGGTGTTTTCAGGCCTTGAAAATCTTGTTTCTTTGAACATTTCGTATAACAAATTCACCGGTTATTTACCAGACAGCAAGTTGTTTCATCAACTAGCAGCAACAGATTTGGATGGAAATCATGGTTTGTGTCCTAATGGACATGATTCATGTTTCAATGGAAGTTCTGCAATGACAAAGATGTTAAATGGCTCGAATTCTAAGAGGTCGGAGATGATTAAAGTTGCGATTGGATTGCTCAGTTCCTTGGCCGTTGCAATGGCAATATTCGGAGTTGTTACCGTCTTTCGAACAAGGAAAATGGTCCGAGATGACAATGATTCTGAGATGGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTAAACTTTTGTGTGGAGCAAATTCTAAAATGTTTAGTGGAATCCAATGTAATTGGAAAAGGGTGTTCCGGGATCGTTTATCGCGCGGAAATGGAAAACGGCGATGTCATCGCCGTCAAAAGGCTATGGCCAACAACAACAGCAGCCACTTCTTCTGCAAGATACAATCATAGTCAAAGTGACAAGTTAGCTGTTAACGGAGGAATTCGCGATTCATTTTCCGCCGAGGTTAAAACTCTTGGTTCGATTCGCCACAAGAACATCGTAAGGTTCTTAGGTTGCTGTTGGAATAGAAACACAAGATTGCTTATGTATGATTACATGCCAAATGGGAGTCTTGGAGGATTACTTCATGAAAGAAGTGGTAATTGCTTGGAGTGGCATATTAGATTCAAGATTATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGACTGTGCTCCTCCTATTGTTCACAGAGATATTAAGGCCAACAACATCCTTATAGGACTTGAATTTGAACCTTACATAGCTGATTTTGGACTTGCAAAACTCGTCGATGATGGTGACTTTGCAAGATCTTCTAGTACACTTGCCGGTTCTTACGGTTACATCGCTCCTGAGTACGGATACATGATGAAGATAACCGAGAAAAGTGATGTATACAGCTACGGCATAGTTGTATTAGAAGTACTAACAGGCAAACAACCGATTGATCCAACAATACCGGACGGACTTCACATTGTCGATTGGGTTAGACAGAAAAGAGGGCGAGTTGAAGTGCTCGACGAAACCTTAACAACAAGGCCAGAATCCGAAATAGAAGAGATGTTGCAGACTCTAGGTGTTGCTTTGTTATGCGTAACCCCGAGTCCAGACGACAGACCAACGATGAAAGACGTGGTTGCAATGATGAAAGAGATTAAACAAGAGAGAGATGAATGTGTGAAAGTTTTTGATCAACATGAGAGTAATCATTCTAATGAGGCAGTGGAAGGGATGAAACATTCATGTCCTGCAACAAGTAGCAGCAACATGAATGTGCATTTACATTACTCTCCTCATATTTCTACAACACTAGATTAA 3360 0.3932 MNSLSYFFHHLLLLTLLLPLSSSTNELTTLLSWTQPSRNHPTPPFSNINPLDTNPCKWSFITCSSQNLVTEIIIQNVQLALPFPPNISSFSSLQKLVISGTNLTGTIPSEIGNCLNLITIDLSSNSLVGEIPSSIGNLKNLENLILNSNQLSGSIPIRVGDCVSLKTLDIFDNNLTGNLPHELGNLSNLQVIRAGGNKDIVGKIPEELGECKNLTILGLADTRISGSIPSSLGKLTLLQTISIYSTLISGEIPREIGNCSELVNLFLYENDLSGEIPFEIGKLVKLEKILLWQNSFVGGIPDEIGNCSSLKILDLSLNFLSGGIPKSVGKLSNLEELMLSNNNISGSIPGSISNLTNLIQLQLDTNEISGLIPAEIGKLTKLTVFFAWQNRLEGRIPSELGDCLSLEALDLSYNDLSDSLPSNLFTLRNLTKLLLISNDISGSIPPEIGNCSSLIRLRLVDNKINGEIPREIGFLNNLSFLDLSGNRLSGSVPLEIGKCRELQMLNLSNNSLSGDLHSYLSSLTMLEVLDVSMNNFSGEVPMSIGQLTSLLRVTLSKNSFSGSIPSTLGKCSGIQLLDLSKNMFSGSIPRELFQIEALDIALNLSHNALSGVIPVEISALNKLSVLDISHNNLEGDLMVFSGLENLVSLNISYNKFTGYLPDSKLFHQLAATDLDGNHGLCPNGHDSCFNGSSAMTKMLNGSNSKRSEMIKVAIGLLSSLAVAMAIFGVVTVFRTRKMVRDDNDSEMGGGGDSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTAATSSARYNHSQSDKLAVNGGIRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGGLLHERSGNCLEWHIRFKIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGRVEVLDETLTTRPESEIEEMLQTLGVALLCVTPSPDDRPTMKDVVAMMKEIKQERDECVKVFDQHESNHSNEAVEGMKHSCPATSSSNMNVHLHYSPHISTTLD 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi892g00006 1119 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515
Vivi892g00006 1119 Gene3D Ribonuclease Inhibitor 428 520 IPR032675 -
Vivi892g00006 1119 Gene3D Phosphorylase Kinase; domain 1 761 870 - -
Vivi892g00006 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 871 1081 - -
Vivi892g00006 1119 Gene3D Ribonuclease Inhibitor 521 600 IPR032675 -
Vivi892g00006 1119 Gene3D Ribonuclease Inhibitor 269 427 IPR032675 -
Vivi892g00006 1119 Gene3D Ribonuclease Inhibitor 601 688 IPR032675 -
Vivi892g00006 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 405 692 - -
Vivi892g00006 1119 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Vivi892g00006 1119 SMART serkin_6 775 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi892g00006 1119 FunFam Nuclear pore complex protein NUP107 23 180 - -
Vivi892g00006 1119 SUPERFAMILY RNI-like 348 678 - -
Vivi892g00006 1119 SUPERFAMILY RNI-like 96 503 - -
Vivi892g00006 1119 ProSiteProfiles Leucine-rich repeat profile. 333 355 IPR001611 GO:0005515
Vivi892g00006 1119 Gene3D Transferase(Phosphotransferase) domain 1 871 1090 - -
Vivi892g00006 1119 Pfam Leucine rich repeat 332 391 IPR001611 GO:0005515
Vivi892g00006 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 915 927 IPR008271 GO:0004672|GO:0006468
Vivi892g00006 1119 PRINTS Leucine-rich repeat signature 478 491 - -
Vivi892g00006 1119 PRINTS Leucine-rich repeat signature 620 633 - -
Vivi892g00006 1119 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 181 274 - -
Vivi892g00006 1119 SUPERFAMILY Protein kinase-like (PK-like) 755 1063 IPR011009 -
Vivi892g00006 1119 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 758 870 - -
Vivi892g00006 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 279 387 - -
Vivi892g00006 1119 Pfam Protein kinase domain 777 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi892g00006 1119 ProSiteProfiles Protein kinase domain profile. 775 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi892g00006 1119 Gene3D Ribonuclease Inhibitor 23 172 IPR032675 -
Vivi892g00006 1119 Gene3D Ribonuclease Inhibitor 173 268 IPR032675 -
Vivi892g00006 1119 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 429 1064 - -
Vivi892g00006 1119 SMART LRR_sd22_2 331 357 - -
Vivi892g00006 1119 SMART LRR_sd22_2 138 159 - -
Vivi892g00006 1119 SMART LRR_sd22_2 475 496 - -
Vivi892g00006 1119 SMART LRR_sd22_2 620 645 - -
Vivi892g00006 1119 SMART LRR_typ_2 475 499 IPR003591 -
Vivi892g00006 1119 SMART LRR_typ_2 427 451 IPR003591 -
Vivi892g00006 1119 SMART LRR_typ_2 138 162 IPR003591 -
Vivi892g00006 1119 SMART LRR_typ_2 547 571 IPR003591 -
Vivi892g00006 1119 SMART LRR_typ_2 643 668 IPR003591 -
Vivi892g00006 1119 SMART LRR_typ_2 331 354 IPR003591 -
Vivi892g00006 1119 SMART LRR_typ_2 355 379 IPR003591 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi892g00006 18 1068 Receptor kinase-like Gene Family AT5G56040 46.579 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi892g00006 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi892g00006 - - gmx:100815339 1688.32