Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi892g00005 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCGGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGGTGATGATCTTTTAGCATCATGTTCATCATCATCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGTTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAATGATAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCATCTATAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGATGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCGGCTTCGATTTTTCAGACCGATGAAGAAAACCCTTTAGTTGACGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTGGTGCATGATGATGGCGAAACAAAACCAGACCTTAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTAAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCTTGTTCATCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAATCAAAACACAACAAGCCCTTGTTTTAACCAAACTTCATGGATAGATCAAACACAAACACAATCACAAACGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAACCGATGGTTGGAGTTGGATATGTTGGTGATGTCCATTACACAAATGGTTCCGTTTCGAATAATATTAACCATAATATTAACCTTTATCAGCATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAAGCGTCGTTTGTAGATAGCAACATTGTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAATCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGCGTCGGATAAGAAACAGGGTTGGAAGCCGGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACAATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATATTGGCCAAATAACAAAAGCAGAATGTATTTACTTGAAAACACTGGTGATTTTGTAAAAGCTAATGGACTTCAAGAGGGAGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACACACCATCCTCACCAAAGAGGAGGAAATGA 2178 0.4008 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDGDDLLASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEVEEDHHGEKMKSCDDNNDNNQGFLNMHDPLDHHGQHAITLASTPSIEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPASIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVVHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNLVHQQPQPQFQDLCPNQNTTSPCFNQTSWIDQTQTQSQTPLVVPPQQFSQPMVGVGYVGDVHYTNGSVSNNINHNINLYQHGSGNEYHQFNVVPSYNQASFVDSNIVQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNASDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDTPSSPKRRK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi892g00005 725 MobiDBLite consensus disorder prediction 697 716 - -
Vivi892g00005 725 Pfam B3 DNA binding domain 579 675 IPR003340 GO:0003677
Vivi892g00005 725 CDD BfiI_C_EcoRII_N_B3 576 677 - -
Vivi892g00005 725 FunFam B3 domain-containing transcription factor FUS3 574 689 - -
Vivi892g00005 725 MobiDBLite consensus disorder prediction 680 725 - -
Vivi892g00005 725 MobiDBLite consensus disorder prediction 543 561 - -
Vivi892g00005 725 Gene3D - 569 688 IPR015300 -
Vivi892g00005 725 MobiDBLite consensus disorder prediction 682 696 - -
Vivi892g00005 725 MobiDBLite consensus disorder prediction 75 114 - -
Vivi892g00005 725 SMART B3_2 578 678 IPR003340 GO:0003677
Vivi892g00005 725 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 256 694 IPR044800 GO:0003700
Vivi892g00005 725 MobiDBLite consensus disorder prediction 1 24 - -
Vivi892g00005 725 MobiDBLite consensus disorder prediction 479 511 - -
Vivi892g00005 725 SUPERFAMILY DNA-binding pseudobarrel domain 577 673 IPR015300 -
Vivi892g00005 725 ProSiteProfiles B3 DNA-binding domain profile. 578 680 IPR003340 GO:0003677
Vivi892g00005 725 MobiDBLite consensus disorder prediction 75 98 - -
Vivi892g00005 725 MobiDBLite consensus disorder prediction 531 568 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi892g00005 20 712 B3 DNA Binding Superfamily AT3G24650 42.436 7.98e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi892g00005 B3 3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi892g00005 K09287 - gmx:100810343 706.827