Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi892g00004 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCGGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGGTGATGATCTTTTAGGTATGAATATGAATGATGATGCATCTGTGTTCTATGCTGATTTTCCTTCTTTACCTGATTTTCCATGCATGTCATCAGCATCATGTTCATCATCATCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGTTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAATGATAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCATCTATAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGATGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCGGCTTCGATTTTTCAGACCGATGAAGAAAACCCTTTAGTTGACGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTGGTGCATGATGATGGCGAAACAAAACCAGACCTTAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTAAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCTTGTTCATCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAATCAAAACACAACAAGCCCTTGTTTTAACCAAACTTCATGGATAGATCAAACACAAACACAATCACAAACGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAACCGATGGTTGGAGTTGGATATGTTGGTGATGTCCATTACACAAATGGTTCCGTTTCGAATAATATTAACCATAATATTAACCTTTATCAGCATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAAGCGTCGTTTGTAGATAGCAACATTGTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAATCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGCGTCGGATAAGAAACAGGGTTGGAAGCCGGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACAATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATATTGGCCAAATAACAAAAGCAGAATGTATTTACTTGAAAACACTGGTGATTTTGTAAAAGCTAATGGACTTCAAGAGGGAGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACACACCATCCTCACCAAAGAGGAGGAAATGA 2256 0.3994 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDGDDLLGMNMNDDASVFYADFPSLPDFPCMSSASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEVEEDHHGEKMKSCDDNNDNNQGFLNMHDPLDHHGQHAITLASTPSIEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPASIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVVHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNLVHQQPQPQFQDLCPNQNTTSPCFNQTSWIDQTQTQSQTPLVVPPQQFSQPMVGVGYVGDVHYTNGSVSNNINHNINLYQHGSGNEYHQFNVVPSYNQASFVDSNIVQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNASDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDTPSSPKRRK 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi892g00004 751 ProSiteProfiles B3 DNA-binding domain profile. 604 706 IPR003340 GO:0003677
Vivi892g00004 751 Pfam B3 DNA binding domain 605 701 IPR003340 GO:0003677
Vivi892g00004 751 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 282 720 IPR044800 GO:0003700
Vivi892g00004 751 SMART B3_2 604 704 IPR003340 GO:0003677
Vivi892g00004 751 SUPERFAMILY DNA-binding pseudobarrel domain 603 699 IPR015300 -
Vivi892g00004 751 FunFam B3 domain-containing transcription factor FUS3 600 715 - -
Vivi892g00004 751 MobiDBLite consensus disorder prediction 557 594 - -
Vivi892g00004 751 MobiDBLite consensus disorder prediction 505 537 - -
Vivi892g00004 751 CDD BfiI_C_EcoRII_N_B3 602 703 - -
Vivi892g00004 751 MobiDBLite consensus disorder prediction 723 742 - -
Vivi892g00004 751 MobiDBLite consensus disorder prediction 569 587 - -
Vivi892g00004 751 MobiDBLite consensus disorder prediction 706 751 - -
Vivi892g00004 751 MobiDBLite consensus disorder prediction 708 722 - -
Vivi892g00004 751 Gene3D - 595 714 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi892g00004 20 738 B3 DNA Binding Superfamily AT3G24650 44.021 1.62e-158 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi892g00004 B3 3.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi892g00004 K09287 - gmx:100810343 748.814