Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi892g00002 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCGGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGGTGATGATCTTTTAGCATCATGTTCATCATCATCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGTTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAATGATAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCATCTATAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGATGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCGGCTTCGATTTTTCAGACCGATGAAGAAAACCCTTTAGTTGACGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTGGTGCATGATGATGGCGAAACAAAACCAGACCTTAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTAAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCTTGTTCATCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAATCAAAACACAACAAGCCCTTGTTTTAACCAAACTTCATGGATAGATCAAACACAAACACAATCACAAACGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAACCGATGGTTGGAGTTGGATATGTTGGTGATGTCCATTACACAAATGGTTCCGTTTCGAATAATATTAACCATAATATTAACCTTTATCAGCATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAAGCGTCGTTTGTAGATAGCAACATTGTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAATCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGCGTCGGATAAGAAACAGGGTTGGAAGCCGGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACAATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGCATCAGATATTGGCCAAATAACAAAAGCAGAATGTATTTACTTGAAAACACTGGTGATTTTGTAAAAGCTAATGGACTTCAAGAGGGAGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACACACCATCCTCACCAAAGAGGAGGAAATGA 2184 0.4011 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDGDDLLASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEVEEDHHGEKMKSCDDNNDNNQGFLNMHDPLDHHGQHAITLASTPSIEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPASIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVVHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNLVHQQPQPQFQDLCPNQNTTSPCFNQTSWIDQTQTQSQTPLVVPPQQFSQPMVGVGYVGDVHYTNGSVSNNINHNINLYQHGSGNEYHQFNVVPSYNQASFVDSNIVQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNASDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDTPSSPKRRK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi892g00002 727 FunFam B3 domain-containing transcription factor FUS3 574 691 - -
Vivi892g00002 727 Gene3D - 569 690 IPR015300 -
Vivi892g00002 727 MobiDBLite consensus disorder prediction 543 561 - -
Vivi892g00002 727 SUPERFAMILY DNA-binding pseudobarrel domain 577 675 IPR015300 -
Vivi892g00002 727 CDD BfiI_C_EcoRII_N_B3 576 679 - -
Vivi892g00002 727 ProSiteProfiles B3 DNA-binding domain profile. 578 682 IPR003340 GO:0003677
Vivi892g00002 727 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 256 696 IPR044800 GO:0003700
Vivi892g00002 727 SMART B3_2 578 680 IPR003340 GO:0003677
Vivi892g00002 727 MobiDBLite consensus disorder prediction 75 114 - -
Vivi892g00002 727 MobiDBLite consensus disorder prediction 1 24 - -
Vivi892g00002 727 MobiDBLite consensus disorder prediction 479 511 - -
Vivi892g00002 727 MobiDBLite consensus disorder prediction 699 718 - -
Vivi892g00002 727 MobiDBLite consensus disorder prediction 682 727 - -
Vivi892g00002 727 MobiDBLite consensus disorder prediction 684 698 - -
Vivi892g00002 727 MobiDBLite consensus disorder prediction 75 98 - -
Vivi892g00002 727 Pfam B3 DNA binding domain 579 677 IPR003340 GO:0003677
Vivi892g00002 727 MobiDBLite consensus disorder prediction 531 568 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi892g00002 20 714 B3 DNA Binding Superfamily AT3G24650 42.323 4.53e-146 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi892g00002 B3 4.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi892g00002 K09287 - gmx:100810343 714.916